Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3148 and GFF3149 overlap by 4 nucleotides GFF3149 and GFF3150 are separated by 101 nucleotides GFF3150 and GFF3151 are separated by 82 nucleotides
GFF3148 - no description, at 581,990 to 583,102
GFF3148
GFF3149 - RND efflux system, inner membrane transporter, at 583,099 to 586,152
GFF3149
GFF3150 - Transcriptional regulator, AsnC family, at 586,254 to 586,784
GFF3150
GFF3151 - no description, at 586,867 to 587,691
GFF3151
Position (kb) 583
584
585
586
587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 582.335 kb on + strand, within GFF3148 at 582.932 kb on + strand, within GFF3148 at 582.932 kb on + strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.939 kb on - strand, within GFF3148 at 583.058 kb on + strand at 583.516 kb on + strand, within GFF3149 at 583.516 kb on + strand, within GFF3149 at 583.570 kb on + strand, within GFF3149 at 583.598 kb on + strand, within GFF3149 at 583.599 kb on - strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.771 kb on + strand, within GFF3149 at 583.771 kb on + strand, within GFF3149 at 584.881 kb on + strand, within GFF3149 at 584.882 kb on - strand, within GFF3149 at 584.882 kb on - strand, within GFF3149 at 585.331 kb on + strand, within GFF3149 at 585.332 kb on - strand, within GFF3149 at 585.332 kb on - strand, within GFF3149 at 585.332 kb on - strand, within GFF3149 at 585.619 kb on + strand, within GFF3149 at 585.619 kb on + strand, within GFF3149 at 585.619 kb on + strand, within GFF3149 at 585.619 kb on + strand, within GFF3149 at 585.620 kb on - strand, within GFF3149 at 585.620 kb on - strand, within GFF3149 at 585.622 kb on + strand, within GFF3149 at 585.622 kb on + strand, within GFF3149 at 585.623 kb on - strand, within GFF3149 at 585.640 kb on + strand, within GFF3149 at 585.728 kb on - strand, within GFF3149 at 585.887 kb on - strand at 586.126 kb on + strand at 586.126 kb on + strand at 586.126 kb on + strand at 586.126 kb on + strand at 586.127 kb on - strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.210 kb on + strand at 586.211 kb on - strand at 586.211 kb on - strand at 586.422 kb on + strand, within GFF3150 at 586.422 kb on + strand, within GFF3150 at 586.584 kb on + strand, within GFF3150 at 586.584 kb on + strand, within GFF3150 at 586.585 kb on - strand, within GFF3150 at 586.585 kb on - strand, within GFF3150 at 586.585 kb on - strand, within GFF3150 at 586.585 kb on - strand, within GFF3150 at 586.621 kb on - strand, within GFF3150 at 586.782 kb on + strand at 586.783 kb on - strand at 586.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 582,335 + GFF3148 0.31 +0.4 582,932 + GFF3148 0.85 +0.8 582,932 + GFF3148 0.85 -0.6 582,933 - GFF3148 0.85 +1.1 582,933 - GFF3148 0.85 -0.2 582,933 - GFF3148 0.85 +1.7 582,933 - GFF3148 0.85 +2.9 582,938 + GFF3148 0.85 -1.9 582,938 + GFF3148 0.85 -2.3 582,938 + GFF3148 0.85 -0.5 582,939 - GFF3148 0.85 -1.9 583,058 + -1.4 583,516 + GFF3149 0.14 -1.3 583,516 + GFF3149 0.14 +1.3 583,570 + GFF3149 0.15 +3.3 583,598 + GFF3149 0.16 +1.3 583,599 - GFF3149 0.16 -1.5 583,762 + GFF3149 0.22 -1.5 583,762 + GFF3149 0.22 -1.3 583,762 + GFF3149 0.22 +0.8 583,762 + GFF3149 0.22 -1.0 583,762 + GFF3149 0.22 -1.2 583,763 - GFF3149 0.22 +1.0 583,763 - GFF3149 0.22 +0.4 583,763 - GFF3149 0.22 -0.2 583,771 + GFF3149 0.22 +1.2 583,771 + GFF3149 0.22 +0.3 584,881 + GFF3149 0.58 +0.4 584,882 - GFF3149 0.58 +0.9 584,882 - GFF3149 0.58 +2.6 585,331 + GFF3149 0.73 -0.4 585,332 - GFF3149 0.73 +0.8 585,332 - GFF3149 0.73 -1.6 585,332 - GFF3149 0.73 +0.2 585,619 + GFF3149 0.83 +1.1 585,619 + GFF3149 0.83 -0.8 585,619 + GFF3149 0.83 +2.6 585,619 + GFF3149 0.83 +0.3 585,620 - GFF3149 0.83 -1.2 585,620 - GFF3149 0.83 -0.8 585,622 + GFF3149 0.83 +0.7 585,622 + GFF3149 0.83 -1.3 585,623 - GFF3149 0.83 -1.2 585,640 + GFF3149 0.83 -1.5 585,728 - GFF3149 0.86 -3.7 585,887 - +1.2 586,126 + -0.4 586,126 + -2.4 586,126 + +0.9 586,126 + +1.9 586,127 - -1.7 586,205 + -1.5 586,205 + -0.3 586,205 + -2.9 586,205 + -1.3 586,205 + -0.2 586,205 + -1.2 586,205 + -1.5 586,205 + -1.8 586,205 + +0.1 586,205 + -3.1 586,205 + -1.9 586,206 - -1.6 586,206 - -0.2 586,206 - -2.4 586,206 - +0.2 586,206 - -2.6 586,206 - -0.5 586,206 - -0.0 586,206 - -1.3 586,210 + -0.8 586,211 - +2.6 586,211 - +1.8 586,422 + GFF3150 0.32 -1.0 586,422 + GFF3150 0.32 -1.6 586,584 + GFF3150 0.62 +0.8 586,584 + GFF3150 0.62 -0.2 586,585 - GFF3150 0.62 -0.9 586,585 - GFF3150 0.62 -1.2 586,585 - GFF3150 0.62 -2.2 586,585 - GFF3150 0.62 -0.1 586,621 - GFF3150 0.69 -0.8 586,782 + -0.5 586,783 - +1.9 586,783 - -0.3
Or see this region's nucleotide sequence