Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3033 and GFF3034 are separated by 74 nucleotides GFF3034 and GFF3035 are separated by 96 nucleotides
GFF3033 - hypothetical protein, at 465,132 to 466,934
GFF3033
GFF3034 - no description, at 467,009 to 467,281
GFF3034
GFF3035 - Ferrichrome-iron receptor, at 467,378 to 469,573
GFF3035
Position (kb) 467
468 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 466.058 kb on - strand, within GFF3033 at 466.431 kb on + strand, within GFF3033 at 466.431 kb on + strand, within GFF3033 at 466.431 kb on + strand, within GFF3033 at 467.033 kb on + strand at 467.034 kb on - strand at 467.034 kb on - strand at 467.034 kb on - strand at 467.034 kb on - strand at 467.229 kb on - strand, within GFF3034 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.862 kb on - strand, within GFF3035 at 467.963 kb on + strand, within GFF3035 at 467.964 kb on - strand, within GFF3035 at 468.122 kb on + strand, within GFF3035 at 468.122 kb on + strand, within GFF3035 at 468.123 kb on - strand, within GFF3035 at 468.251 kb on + strand, within GFF3035 at 468.263 kb on + strand, within GFF3035
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 466,058 - GFF3033 0.51 +0.1 466,431 + GFF3033 0.72 +1.4 466,431 + GFF3033 0.72 -1.9 466,431 + GFF3033 0.72 -1.3 467,033 + -1.8 467,034 - -0.6 467,034 - -2.9 467,034 - -2.3 467,034 - +0.3 467,229 - GFF3034 0.81 -2.1 467,789 + GFF3035 0.19 -2.0 467,789 + GFF3035 0.19 +0.1 467,789 + GFF3035 0.19 -1.5 467,789 + GFF3035 0.19 -1.6 467,789 + GFF3035 0.19 -4.4 467,789 + GFF3035 0.19 -0.2 467,789 + GFF3035 0.19 +1.7 467,790 - GFF3035 0.19 -0.8 467,790 - GFF3035 0.19 -0.4 467,790 - GFF3035 0.19 +0.7 467,790 - GFF3035 0.19 +0.3 467,790 - GFF3035 0.19 -0.4 467,790 - GFF3035 0.19 -3.1 467,790 - GFF3035 0.19 -0.5 467,862 - GFF3035 0.22 -2.8 467,963 + GFF3035 0.27 -3.0 467,964 - GFF3035 0.27 -2.9 468,122 + GFF3035 0.34 -2.0 468,122 + GFF3035 0.34 -0.8 468,123 - GFF3035 0.34 -0.2 468,251 + GFF3035 0.40 +1.5 468,263 + GFF3035 0.40 +0.5
Or see this region's nucleotide sequence