Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2986 and GFF2987 are separated by 30 nucleotides GFF2987 and GFF2988 are separated by 177 nucleotides
GFF2986 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 416,577 to 417,674
GFF2986
GFF2987 - CBS domain protein, at 417,705 to 418,157
GFF2987
GFF2988 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 418,335 to 419,639
GFF2988
Position (kb) 417
418
419 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 416.925 kb on + strand, within GFF2986 at 416.926 kb on - strand, within GFF2986 at 416.926 kb on - strand, within GFF2986 at 417.054 kb on + strand, within GFF2986 at 417.054 kb on + strand, within GFF2986 at 417.055 kb on - strand, within GFF2986 at 417.055 kb on - strand, within GFF2986 at 417.055 kb on - strand, within GFF2986 at 417.055 kb on - strand, within GFF2986 at 417.055 kb on - strand, within GFF2986 at 417.055 kb on - strand, within GFF2986 at 417.243 kb on + strand, within GFF2986 at 417.243 kb on + strand, within GFF2986 at 417.243 kb on + strand, within GFF2986 at 417.243 kb on + strand, within GFF2986 at 417.243 kb on + strand, within GFF2986 at 417.243 kb on + strand, within GFF2986 at 417.244 kb on - strand, within GFF2986 at 417.244 kb on - strand, within GFF2986 at 417.244 kb on - strand, within GFF2986 at 417.244 kb on - strand, within GFF2986 at 417.244 kb on - strand, within GFF2986 at 417.417 kb on + strand, within GFF2986 at 417.418 kb on - strand, within GFF2986 at 417.456 kb on + strand, within GFF2986 at 417.456 kb on + strand, within GFF2986 at 417.456 kb on + strand, within GFF2986 at 417.457 kb on - strand, within GFF2986 at 417.457 kb on - strand, within GFF2986 at 417.457 kb on - strand, within GFF2986 at 417.457 kb on - strand, within GFF2986 at 417.457 kb on - strand, within GFF2986 at 417.477 kb on + strand, within GFF2986 at 417.478 kb on - strand, within GFF2986 at 417.478 kb on - strand, within GFF2986 at 417.579 kb on + strand at 417.580 kb on - strand at 417.580 kb on - strand at 417.580 kb on - strand at 417.745 kb on + strand at 417.745 kb on + strand at 417.745 kb on + strand at 417.745 kb on + strand at 417.745 kb on + strand at 417.745 kb on + strand at 417.745 kb on + strand at 417.745 kb on + strand at 417.746 kb on - strand at 417.746 kb on - strand at 417.746 kb on - strand at 417.746 kb on - strand at 417.805 kb on + strand, within GFF2987 at 417.805 kb on + strand, within GFF2987 at 417.805 kb on + strand, within GFF2987 at 417.805 kb on + strand, within GFF2987 at 417.805 kb on + strand, within GFF2987 at 417.806 kb on - strand, within GFF2987 at 417.806 kb on - strand, within GFF2987 at 417.853 kb on + strand, within GFF2987 at 417.853 kb on + strand, within GFF2987 at 417.853 kb on + strand, within GFF2987 at 417.853 kb on + strand, within GFF2987 at 417.853 kb on + strand, within GFF2987 at 417.853 kb on + strand, within GFF2987 at 417.853 kb on + strand, within GFF2987 at 417.854 kb on - strand, within GFF2987 at 417.854 kb on - strand, within GFF2987 at 417.854 kb on - strand, within GFF2987 at 417.854 kb on - strand, within GFF2987 at 417.854 kb on - strand, within GFF2987 at 418.201 kb on + strand at 418.201 kb on + strand at 418.201 kb on + strand at 418.201 kb on + strand at 418.201 kb on + strand at 418.202 kb on - strand at 418.202 kb on - strand at 418.202 kb on - strand at 418.202 kb on - strand at 418.202 kb on - strand at 418.202 kb on - strand at 418.202 kb on - strand at 418.202 kb on - strand at 418.202 kb on - strand at 418.228 kb on + strand at 418.230 kb on + strand at 418.230 kb on + strand at 418.230 kb on + strand at 418.231 kb on - strand at 418.231 kb on - strand at 418.288 kb on + strand at 418.288 kb on + strand at 418.289 kb on - strand at 418.506 kb on + strand, within GFF2988 at 418.507 kb on - strand, within GFF2988 at 418.561 kb on + strand, within GFF2988 at 418.671 kb on + strand, within GFF2988 at 418.698 kb on + strand, within GFF2988 at 418.698 kb on + strand, within GFF2988 at 418.698 kb on + strand, within GFF2988 at 418.698 kb on + strand, within GFF2988 at 418.699 kb on - strand, within GFF2988 at 418.908 kb on + strand, within GFF2988 at 418.908 kb on + strand, within GFF2988 at 418.908 kb on + strand, within GFF2988 at 418.908 kb on + strand, within GFF2988 at 418.908 kb on + strand, within GFF2988 at 418.908 kb on + strand, within GFF2988 at 418.909 kb on - strand, within GFF2988 at 418.947 kb on + strand, within GFF2988 at 418.948 kb on - strand, within GFF2988 at 418.948 kb on - strand, within GFF2988 at 419.064 kb on + strand, within GFF2988 at 419.064 kb on + strand, within GFF2988 at 419.065 kb on - strand, within GFF2988
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 416,925 + GFF2986 0.32 +0.1 416,926 - GFF2986 0.32 +0.6 416,926 - GFF2986 0.32 -4.8 417,054 + GFF2986 0.43 +0.3 417,054 + GFF2986 0.43 -0.7 417,055 - GFF2986 0.44 +0.3 417,055 - GFF2986 0.44 +2.6 417,055 - GFF2986 0.44 +1.3 417,055 - GFF2986 0.44 +0.3 417,055 - GFF2986 0.44 +0.3 417,055 - GFF2986 0.44 -1.7 417,243 + GFF2986 0.61 -4.2 417,243 + GFF2986 0.61 +0.9 417,243 + GFF2986 0.61 -1.1 417,243 + GFF2986 0.61 -1.0 417,243 + GFF2986 0.61 -3.0 417,243 + GFF2986 0.61 -1.2 417,244 - GFF2986 0.61 -1.5 417,244 - GFF2986 0.61 -2.3 417,244 - GFF2986 0.61 +0.8 417,244 - GFF2986 0.61 +0.7 417,244 - GFF2986 0.61 -0.4 417,417 + GFF2986 0.77 -0.5 417,418 - GFF2986 0.77 +0.5 417,456 + GFF2986 0.80 +0.5 417,456 + GFF2986 0.80 +2.3 417,456 + GFF2986 0.80 -1.3 417,457 - GFF2986 0.80 -1.6 417,457 - GFF2986 0.80 -0.2 417,457 - GFF2986 0.80 -1.2 417,457 - GFF2986 0.80 -1.1 417,457 - GFF2986 0.80 -2.0 417,477 + GFF2986 0.82 +1.6 417,478 - GFF2986 0.82 -1.7 417,478 - GFF2986 0.82 -1.6 417,579 + -0.4 417,580 - +1.1 417,580 - -1.1 417,580 - +0.2 417,745 + -3.5 417,745 + +0.3 417,745 + -2.8 417,745 + -3.5 417,745 + -1.8 417,745 + -1.0 417,745 + -2.1 417,745 + -1.0 417,746 - -4.3 417,746 - -2.8 417,746 - +0.1 417,746 - +0.3 417,805 + GFF2987 0.22 +1.9 417,805 + GFF2987 0.22 -1.0 417,805 + GFF2987 0.22 +1.2 417,805 + GFF2987 0.22 -2.7 417,805 + GFF2987 0.22 -3.9 417,806 - GFF2987 0.22 -2.2 417,806 - GFF2987 0.22 -2.3 417,853 + GFF2987 0.33 -1.8 417,853 + GFF2987 0.33 -2.8 417,853 + GFF2987 0.33 -1.8 417,853 + GFF2987 0.33 -0.7 417,853 + GFF2987 0.33 -1.8 417,853 + GFF2987 0.33 -2.5 417,853 + GFF2987 0.33 -2.8 417,854 - GFF2987 0.33 -2.8 417,854 - GFF2987 0.33 -0.5 417,854 - GFF2987 0.33 -0.1 417,854 - GFF2987 0.33 -1.0 417,854 - GFF2987 0.33 -2.5 418,201 + -1.5 418,201 + -0.4 418,201 + -2.8 418,201 + -1.6 418,201 + -3.3 418,202 - +0.3 418,202 - -1.6 418,202 - -1.0 418,202 - +0.6 418,202 - -1.3 418,202 - -1.1 418,202 - -1.5 418,202 - +0.0 418,202 - +0.3 418,228 + -0.5 418,230 + +0.2 418,230 + -2.8 418,230 + +1.1 418,231 - +2.4 418,231 - +2.4 418,288 + +0.1 418,288 + +1.9 418,289 - -0.1 418,506 + GFF2988 0.13 -2.2 418,507 - GFF2988 0.13 -2.2 418,561 + GFF2988 0.17 -0.2 418,671 + GFF2988 0.26 -1.9 418,698 + GFF2988 0.28 -1.7 418,698 + GFF2988 0.28 -2.5 418,698 + GFF2988 0.28 +0.1 418,698 + GFF2988 0.28 -0.9 418,699 - GFF2988 0.28 -1.5 418,908 + GFF2988 0.44 -0.5 418,908 + GFF2988 0.44 -1.9 418,908 + GFF2988 0.44 -1.0 418,908 + GFF2988 0.44 +0.8 418,908 + GFF2988 0.44 -3.6 418,908 + GFF2988 0.44 -0.8 418,909 - GFF2988 0.44 +1.3 418,947 + GFF2988 0.47 -2.8 418,948 - GFF2988 0.47 -3.1 418,948 - GFF2988 0.47 +0.7 419,064 + GFF2988 0.56 -2.6 419,064 + GFF2988 0.56 -0.1 419,065 - GFF2988 0.56 +0.7
Or see this region's nucleotide sequence