Strain Fitness in Variovorax sp. SCN45 around GFF2924

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2923 and GFF2924 are separated by 25 nucleotidesGFF2924 and GFF2925 are separated by 92 nucleotides GFF2923 - Tripartite tricarboxylate transporter TctC family, at 350,137 to 351,117 GFF2923 GFF2924 - BUG/TctC family periplasmic protein, at 351,143 to 352,135 GFF2924 GFF2925 - Phosphatidylserine decarboxylase (EC 4.1.1.65), at 352,228 to 353,079 GFF2925 Position (kb) 351 352 353Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 350.236 kb on + strand, within GFF2923at 350.419 kb on + strand, within GFF2923at 350.419 kb on + strand, within GFF2923at 350.419 kb on + strand, within GFF2923at 350.420 kb on - strand, within GFF2923at 350.420 kb on - strand, within GFF2923at 350.485 kb on + strand, within GFF2923at 350.485 kb on + strand, within GFF2923at 350.557 kb on + strand, within GFF2923at 350.557 kb on + strand, within GFF2923at 350.558 kb on - strand, within GFF2923at 350.558 kb on - strand, within GFF2923at 350.558 kb on - strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 351.022 kb on + strandat 351.022 kb on + strandat 351.022 kb on + strandat 351.023 kb on - strandat 351.028 kb on + strandat 351.028 kb on + strandat 351.028 kb on + strandat 351.028 kb on + strandat 351.029 kb on - strandat 351.029 kb on - strandat 351.076 kb on + strandat 351.251 kb on + strand, within GFF2924at 351.251 kb on + strand, within GFF2924at 351.251 kb on + strand, within GFF2924at 351.251 kb on + strand, within GFF2924at 351.251 kb on + strand, within GFF2924at 351.252 kb on - strand, within GFF2924at 351.252 kb on - strand, within GFF2924at 351.252 kb on - strand, within GFF2924at 351.464 kb on + strand, within GFF2924at 351.464 kb on + strand, within GFF2924at 351.465 kb on - strand, within GFF2924at 351.465 kb on - strand, within GFF2924at 351.479 kb on + strand, within GFF2924at 351.479 kb on + strand, within GFF2924at 351.480 kb on - strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.561 kb on - strand, within GFF2924at 351.561 kb on - strand, within GFF2924at 351.671 kb on + strand, within GFF2924at 351.671 kb on + strand, within GFF2924at 351.671 kb on + strand, within GFF2924at 351.671 kb on + strand, within GFF2924at 351.671 kb on + strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.704 kb on + strand, within GFF2924at 351.704 kb on + strand, within GFF2924at 351.704 kb on + strand, within GFF2924at 351.704 kb on + strand, within GFF2924at 351.705 kb on - strand, within GFF2924at 351.705 kb on - strand, within GFF2924at 352.133 kb on + strandat 352.133 kb on + strandat 352.133 kb on + strandat 352.133 kb on + strandat 352.133 kb on + strandat 352.133 kb on + strandat 352.134 kb on - strandat 352.134 kb on - strandat 352.134 kb on - strandat 352.134 kb on - strandat 352.134 kb on - strandat 352.134 kb on - strandat 352.134 kb on - strandat 352.134 kb on - strandat 352.134 kb on - strandat 352.134 kb on - strandat 352.134 kb on - strandat 352.164 kb on + strandat 352.164 kb on + strandat 352.165 kb on - strandat 352.165 kb on - strandat 352.165 kb on - strandat 352.187 kb on + strandat 352.188 kb on - strandat 352.188 kb on - strandat 352.189 kb on + strandat 352.189 kb on + strandat 352.189 kb on + strandat 352.189 kb on + strandat 352.189 kb on + strandat 352.189 kb on + strandat 352.189 kb on + strandat 352.189 kb on + strandat 352.189 kb on + strandat 352.189 kb on + strandat 352.189 kb on + strandat 352.189 kb on + strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 352.190 kb on - strandat 353.065 kb on + strandat 353.066 kb on - strandat 353.066 kb on - strandat 353.066 kb on - strandat 353.116 kb on + strandat 353.116 kb on + strandat 353.117 kb on - strandat 353.120 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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350,236 + GFF2923 0.10 -2.5
350,419 + GFF2923 0.29 +0.3
350,419 + GFF2923 0.29 +1.6
350,419 + GFF2923 0.29 +0.3
350,420 - GFF2923 0.29 +1.5
350,420 - GFF2923 0.29 -0.1
350,485 + GFF2923 0.35 +2.4
350,485 + GFF2923 0.35 -0.8
350,557 + GFF2923 0.43 +0.6
350,557 + GFF2923 0.43 +1.3
350,558 - GFF2923 0.43 -0.1
350,558 - GFF2923 0.43 -2.6
350,558 - GFF2923 0.43 +0.9
350,785 + GFF2923 0.66 -0.5
350,785 + GFF2923 0.66 -0.1
350,785 + GFF2923 0.66 +0.5
350,785 + GFF2923 0.66 +1.6
350,785 + GFF2923 0.66 -0.7
350,785 + GFF2923 0.66 -1.8
350,785 + GFF2923 0.66 -0.7
350,785 + GFF2923 0.66 +0.9
350,785 + GFF2923 0.66 +0.8
350,785 + GFF2923 0.66 -1.5
350,786 - GFF2923 0.66 +1.9
350,786 - GFF2923 0.66 +0.2
350,786 - GFF2923 0.66 -1.1
350,786 - GFF2923 0.66 -0.5
350,786 - GFF2923 0.66 -1.1
350,786 - GFF2923 0.66 -0.7
351,022 + -0.5
351,022 + -1.1
351,022 + -2.0
351,023 - +0.1
351,028 + -0.0
351,028 + -0.1
351,028 + -0.1
351,028 + -1.4
351,029 - -1.1
351,029 - -2.0
351,076 + -2.2
351,251 + GFF2924 0.11 +0.7
351,251 + GFF2924 0.11 +0.0
351,251 + GFF2924 0.11 +0.7
351,251 + GFF2924 0.11 +1.5
351,251 + GFF2924 0.11 +2.6
351,252 - GFF2924 0.11 +0.3
351,252 - GFF2924 0.11 +0.2
351,252 - GFF2924 0.11 -2.4
351,464 + GFF2924 0.32 +0.3
351,464 + GFF2924 0.32 -1.6
351,465 - GFF2924 0.32 +0.3
351,465 - GFF2924 0.32 +1.5
351,479 + GFF2924 0.34 +0.3
351,479 + GFF2924 0.34 -2.4
351,480 - GFF2924 0.34 -0.9
351,560 + GFF2924 0.42 -2.5
351,560 + GFF2924 0.42 -1.9
351,560 + GFF2924 0.42 +0.2
351,560 + GFF2924 0.42 +0.2
351,560 + GFF2924 0.42 +1.1
351,560 + GFF2924 0.42 +1.5
351,561 - GFF2924 0.42 +2.1
351,561 - GFF2924 0.42 +1.9
351,671 + GFF2924 0.53 -2.5
351,671 + GFF2924 0.53 -0.7
351,671 + GFF2924 0.53 +0.2
351,671 + GFF2924 0.53 -0.4
351,671 + GFF2924 0.53 +0.3
351,672 - GFF2924 0.53 -1.1
351,672 - GFF2924 0.53 -2.3
351,672 - GFF2924 0.53 +1.4
351,672 - GFF2924 0.53 +0.1
351,672 - GFF2924 0.53 +1.2
351,672 - GFF2924 0.53 -0.4
351,704 + GFF2924 0.56 -3.3
351,704 + GFF2924 0.56 -0.5
351,704 + GFF2924 0.56 -1.4
351,704 + GFF2924 0.56 -0.2
351,705 - GFF2924 0.57 +0.7
351,705 - GFF2924 0.57 +0.3
352,133 + -0.5
352,133 + +0.9
352,133 + -2.3
352,133 + -1.5
352,133 + +1.7
352,133 + -2.3
352,134 - -1.3
352,134 - +0.9
352,134 - +0.4
352,134 - -1.5
352,134 - -1.0
352,134 - -2.7
352,134 - +0.8
352,134 - -1.1
352,134 - +1.9
352,134 - -1.2
352,134 - -2.5
352,164 + +0.2
352,164 + +1.3
352,165 - -1.3
352,165 - -2.4
352,165 - -0.1
352,187 + -1.8
352,188 - +0.9
352,188 - -2.4
352,189 + -0.1
352,189 + +1.9
352,189 + -3.3
352,189 + -0.8
352,189 + -1.5
352,189 + -1.1
352,189 + -0.7
352,189 + +1.9
352,189 + +0.3
352,189 + -0.8
352,189 + +1.1
352,189 + +0.5
352,190 - -1.7
352,190 - -0.5
352,190 - +1.6
352,190 - +2.7
352,190 - -2.3
352,190 - -0.9
352,190 - -0.1
352,190 - +0.3
352,190 - +2.3
352,190 - -0.5
352,190 - -1.1
352,190 - -0.5
352,190 - +0.2
352,190 - +0.9
352,190 - +1.2
352,190 - -1.3
352,190 - +1.3
352,190 - +0.4
352,190 - +0.1
352,190 - -0.5
352,190 - +2.0
353,065 + +0.5
353,066 - -1.7
353,066 - -3.9
353,066 - -0.4
353,116 + -0.7
353,116 + -2.6
353,117 - -2.4
353,120 + -3.1

Or see this region's nucleotide sequence