Strain Fitness in Variovorax sp. SCN45 around GFF2882

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2881 and GFF2882 are separated by 123 nucleotidesGFF2882 and GFF2883 are separated by 51 nucleotides GFF2881 - Putative transmembrane protein, at 306,808 to 307,935 GFF2881 GFF2882 - BUG/TctC family periplasmic protein, at 308,059 to 309,048 GFF2882 GFF2883 - CaiB/BaiF family protein, at 309,100 to 310,305 GFF2883 Position (kb) 308 309 310Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 307.294 kb on + strand, within GFF2881at 307.294 kb on + strand, within GFF2881at 307.294 kb on + strand, within GFF2881at 307.294 kb on + strand, within GFF2881at 307.294 kb on + strand, within GFF2881at 307.294 kb on + strand, within GFF2881at 307.294 kb on + strand, within GFF2881at 307.294 kb on + strand, within GFF2881at 307.294 kb on + strand, within GFF2881at 307.294 kb on + strand, within GFF2881at 307.294 kb on + strand, within GFF2881at 307.294 kb on + strand, within GFF2881at 307.295 kb on - strand, within GFF2881at 307.295 kb on - strand, within GFF2881at 307.295 kb on - strand, within GFF2881at 307.295 kb on - strand, within GFF2881at 307.295 kb on - strand, within GFF2881at 307.468 kb on + strand, within GFF2881at 307.468 kb on + strand, within GFF2881at 307.468 kb on + strand, within GFF2881at 307.468 kb on + strand, within GFF2881at 307.468 kb on + strand, within GFF2881at 307.468 kb on + strand, within GFF2881at 307.468 kb on + strand, within GFF2881at 307.468 kb on + strand, within GFF2881at 307.468 kb on + strand, within GFF2881at 307.468 kb on + strand, within GFF2881at 307.469 kb on - strand, within GFF2881at 307.469 kb on - strand, within GFF2881at 307.469 kb on - strand, within GFF2881at 307.469 kb on - strand, within GFF2881at 307.469 kb on - strand, within GFF2881at 307.469 kb on - strand, within GFF2881at 307.912 kb on + strandat 307.912 kb on + strandat 307.912 kb on + strandat 307.933 kb on + strandat 307.934 kb on - strandat 307.934 kb on - strandat 307.934 kb on - strandat 307.934 kb on - strandat 308.100 kb on - strandat 308.123 kb on + strandat 308.123 kb on + strandat 308.294 kb on + strand, within GFF2882at 308.295 kb on - strand, within GFF2882at 308.295 kb on - strand, within GFF2882at 308.295 kb on - strand, within GFF2882at 308.295 kb on - strand, within GFF2882at 308.295 kb on - strand, within GFF2882at 308.480 kb on + strand, within GFF2882at 308.480 kb on + strand, within GFF2882at 308.480 kb on + strand, within GFF2882at 308.481 kb on - strand, within GFF2882at 308.481 kb on - strand, within GFF2882at 308.481 kb on - strand, within GFF2882at 308.487 kb on + strand, within GFF2882at 308.487 kb on + strand, within GFF2882at 308.487 kb on + strand, within GFF2882at 308.488 kb on - strand, within GFF2882at 308.488 kb on - strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.573 kb on + strand, within GFF2882at 308.573 kb on + strand, within GFF2882at 309.068 kb on + strandat 309.149 kb on + strandat 309.335 kb on + strand, within GFF2883at 309.335 kb on + strand, within GFF2883at 309.335 kb on + strand, within GFF2883at 309.335 kb on + strand, within GFF2883at 309.587 kb on - strand, within GFF2883at 309.587 kb on - strand, within GFF2883at 309.602 kb on + strand, within GFF2883at 309.602 kb on + strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.662 kb on + strand, within GFF2883at 309.662 kb on + strand, within GFF2883at 309.663 kb on - strand, within GFF2883at 309.663 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.989 kb on + strand, within GFF2883

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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307,294 + GFF2881 0.43 +0.3
307,294 + GFF2881 0.43 -0.2
307,294 + GFF2881 0.43 -1.7
307,294 + GFF2881 0.43 -1.7
307,294 + GFF2881 0.43 +1.8
307,294 + GFF2881 0.43 +0.3
307,294 + GFF2881 0.43 -1.1
307,294 + GFF2881 0.43 +1.8
307,294 + GFF2881 0.43 -0.9
307,294 + GFF2881 0.43 -0.9
307,294 + GFF2881 0.43 +1.4
307,294 + GFF2881 0.43 -3.2
307,295 - GFF2881 0.43 -0.7
307,295 - GFF2881 0.43 +2.1
307,295 - GFF2881 0.43 +1.2
307,295 - GFF2881 0.43 +1.9
307,295 - GFF2881 0.43 -0.9
307,468 + GFF2881 0.59 -2.1
307,468 + GFF2881 0.59 -3.3
307,468 + GFF2881 0.59 -0.4
307,468 + GFF2881 0.59 -1.6
307,468 + GFF2881 0.59 -1.2
307,468 + GFF2881 0.59 -2.2
307,468 + GFF2881 0.59 +1.0
307,468 + GFF2881 0.59 -0.1
307,468 + GFF2881 0.59 -0.4
307,468 + GFF2881 0.59 +3.1
307,469 - GFF2881 0.59 +0.7
307,469 - GFF2881 0.59 -0.3
307,469 - GFF2881 0.59 +2.2
307,469 - GFF2881 0.59 -1.4
307,469 - GFF2881 0.59 -1.8
307,469 - GFF2881 0.59 +0.9
307,912 + +0.3
307,912 + -0.9
307,912 + +1.1
307,933 + +1.2
307,934 - -2.0
307,934 - -2.2
307,934 - -2.2
307,934 - +3.6
308,100 - -3.2
308,123 + -1.0
308,123 + -2.8
308,294 + GFF2882 0.24 +1.5
308,295 - GFF2882 0.24 -1.7
308,295 - GFF2882 0.24 -3.0
308,295 - GFF2882 0.24 +0.2
308,295 - GFF2882 0.24 -3.7
308,295 - GFF2882 0.24 -1.6
308,480 + GFF2882 0.43 -0.1
308,480 + GFF2882 0.43 +0.8
308,480 + GFF2882 0.43 +0.3
308,481 - GFF2882 0.43 +3.2
308,481 - GFF2882 0.43 +0.9
308,481 - GFF2882 0.43 +1.4
308,487 + GFF2882 0.43 +0.6
308,487 + GFF2882 0.43 -1.4
308,487 + GFF2882 0.43 -3.8
308,488 - GFF2882 0.43 -0.1
308,488 - GFF2882 0.43 -3.6
308,567 + GFF2882 0.51 -0.1
308,567 + GFF2882 0.51 +0.3
308,567 + GFF2882 0.51 -0.0
308,567 + GFF2882 0.51 -0.1
308,567 + GFF2882 0.51 -0.9
308,567 + GFF2882 0.51 +1.1
308,567 + GFF2882 0.51 -1.1
308,568 - GFF2882 0.51 +0.3
308,568 - GFF2882 0.51 +0.5
308,568 - GFF2882 0.51 +0.0
308,568 - GFF2882 0.51 +0.2
308,568 - GFF2882 0.51 -0.1
308,568 - GFF2882 0.51 -4.0
308,568 - GFF2882 0.51 +4.7
308,573 + GFF2882 0.52 +1.2
308,573 + GFF2882 0.52 +0.8
309,068 + +1.7
309,149 + -0.1
309,335 + GFF2883 0.19 +2.2
309,335 + GFF2883 0.19 -0.5
309,335 + GFF2883 0.19 -0.5
309,335 + GFF2883 0.19 -2.2
309,587 - GFF2883 0.40 -1.3
309,587 - GFF2883 0.40 +1.9
309,602 + GFF2883 0.42 +2.4
309,602 + GFF2883 0.42 +1.0
309,603 - GFF2883 0.42 +1.9
309,603 - GFF2883 0.42 -1.9
309,603 - GFF2883 0.42 +1.0
309,603 - GFF2883 0.42 +0.3
309,603 - GFF2883 0.42 -2.4
309,603 - GFF2883 0.42 -0.8
309,662 + GFF2883 0.47 -1.1
309,662 + GFF2883 0.47 -2.9
309,663 - GFF2883 0.47 +0.3
309,663 - GFF2883 0.47 -2.1
309,852 - GFF2883 0.62 +0.2
309,852 - GFF2883 0.62 -1.4
309,852 - GFF2883 0.62 +0.2
309,852 - GFF2883 0.62 -0.6
309,852 - GFF2883 0.62 -0.4
309,852 - GFF2883 0.62 -0.6
309,852 - GFF2883 0.62 -0.9
309,852 - GFF2883 0.62 +1.9
309,938 + GFF2883 0.69 -1.1
309,938 + GFF2883 0.69 -0.5
309,938 + GFF2883 0.69 +1.8
309,938 + GFF2883 0.69 -0.9
309,938 + GFF2883 0.69 -0.9
309,938 + GFF2883 0.69 -0.4
309,938 + GFF2883 0.69 +1.1
309,939 - GFF2883 0.70 +0.8
309,939 - GFF2883 0.70 +1.9
309,939 - GFF2883 0.70 -1.4
309,939 - GFF2883 0.70 +0.3
309,939 - GFF2883 0.70 +0.9
309,939 - GFF2883 0.70 -1.1
309,939 - GFF2883 0.70 +0.8
309,939 - GFF2883 0.70 +0.4
309,939 - GFF2883 0.70 -3.8
309,939 - GFF2883 0.70 -3.0
309,986 + GFF2883 0.73 -0.5
309,986 + GFF2883 0.73 -3.4
309,986 + GFF2883 0.73 +0.7
309,986 + GFF2883 0.73 -1.7
309,986 + GFF2883 0.73 -0.1
309,986 + GFF2883 0.73 -2.5
309,987 - GFF2883 0.74 -1.1
309,987 - GFF2883 0.74 -0.4
309,987 - GFF2883 0.74 -2.0
309,987 - GFF2883 0.74 -1.8
309,987 - GFF2883 0.74 -0.5
309,987 - GFF2883 0.74 -1.4
309,989 + GFF2883 0.74 -0.4

Or see this region's nucleotide sequence