Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2869 and GFF2870 are separated by 48 nucleotides GFF2870 and GFF2871 are separated by 192 nucleotides GFF2871 and GFF2872 are separated by 51 nucleotides GFF2872 and GFF2873 are separated by 67 nucleotides
GFF2869 - putative anion permease, at 293,192 to 294,604
GFF2869
GFF2870 - Nicotinate phosphoribosyltransferase (EC 6.3.4.21), at 294,653 to 295,873
GFF2870
GFF2871 - UPF0337 protein YjbJ, at 296,066 to 296,299
GFF2871
GFF2872 - Cell division protein FtsL, at 296,351 to 296,758
GFF2872
GFF2873 - Propionyl-CoA thioesterase activity, at 296,826 to 297,269
GFF2873
Position (kb) 294
295
296 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 294.613 kb on - strand at 294.617 kb on + strand at 294.617 kb on + strand at 294.618 kb on - strand at 294.618 kb on - strand at 294.645 kb on + strand at 294.645 kb on + strand at 294.645 kb on + strand at 294.693 kb on + strand at 294.694 kb on - strand at 294.694 kb on - strand at 294.694 kb on - strand at 294.702 kb on + strand at 294.702 kb on + strand at 294.702 kb on + strand at 294.703 kb on - strand at 294.703 kb on - strand at 294.703 kb on - strand at 294.703 kb on - strand at 294.703 kb on - strand at 294.703 kb on - strand at 294.804 kb on + strand, within GFF2870 at 294.804 kb on + strand, within GFF2870 at 294.804 kb on + strand, within GFF2870 at 294.873 kb on + strand, within GFF2870 at 294.874 kb on - strand, within GFF2870 at 294.954 kb on + strand, within GFF2870 at 294.954 kb on + strand, within GFF2870 at 294.955 kb on - strand, within GFF2870 at 294.955 kb on - strand, within GFF2870 at 294.955 kb on - strand, within GFF2870 at 294.955 kb on - strand, within GFF2870 at 295.032 kb on + strand, within GFF2870 at 295.032 kb on + strand, within GFF2870 at 295.032 kb on + strand, within GFF2870 at 295.032 kb on + strand, within GFF2870 at 295.032 kb on + strand, within GFF2870 at 295.032 kb on + strand, within GFF2870 at 295.033 kb on - strand, within GFF2870 at 295.033 kb on - strand, within GFF2870 at 295.033 kb on - strand, within GFF2870 at 295.033 kb on - strand, within GFF2870 at 295.033 kb on - strand, within GFF2870 at 295.068 kb on + strand, within GFF2870 at 295.068 kb on + strand, within GFF2870 at 295.069 kb on - strand, within GFF2870 at 295.069 kb on - strand, within GFF2870 at 295.069 kb on - strand, within GFF2870 at 295.105 kb on - strand, within GFF2870 at 295.182 kb on + strand, within GFF2870 at 295.182 kb on + strand, within GFF2870 at 295.182 kb on + strand, within GFF2870 at 295.183 kb on - strand, within GFF2870 at 295.230 kb on + strand, within GFF2870 at 295.230 kb on + strand, within GFF2870 at 295.230 kb on + strand, within GFF2870 at 295.230 kb on + strand, within GFF2870 at 295.230 kb on + strand, within GFF2870 at 295.230 kb on + strand, within GFF2870 at 295.231 kb on - strand, within GFF2870 at 295.231 kb on - strand, within GFF2870 at 295.231 kb on - strand, within GFF2870 at 295.231 kb on - strand, within GFF2870 at 295.231 kb on - strand, within GFF2870 at 295.231 kb on - strand, within GFF2870 at 295.231 kb on - strand, within GFF2870 at 295.378 kb on - strand, within GFF2870 at 295.437 kb on - strand, within GFF2870 at 295.488 kb on + strand, within GFF2870 at 295.488 kb on + strand, within GFF2870 at 295.489 kb on - strand, within GFF2870 at 295.489 kb on - strand, within GFF2870 at 295.489 kb on - strand, within GFF2870 at 295.489 kb on - strand, within GFF2870 at 295.599 kb on + strand, within GFF2870 at 295.599 kb on + strand, within GFF2870 at 295.599 kb on + strand, within GFF2870 at 295.599 kb on + strand, within GFF2870 at 295.599 kb on + strand, within GFF2870 at 295.599 kb on + strand, within GFF2870 at 295.599 kb on + strand, within GFF2870 at 295.599 kb on + strand, within GFF2870 at 295.600 kb on - strand, within GFF2870 at 295.600 kb on - strand, within GFF2870 at 295.600 kb on - strand, within GFF2870 at 295.600 kb on - strand, within GFF2870 at 295.600 kb on - strand, within GFF2870 at 295.671 kb on + strand, within GFF2870 at 295.671 kb on + strand, within GFF2870 at 295.672 kb on - strand, within GFF2870 at 295.672 kb on - strand, within GFF2870 at 295.672 kb on - strand, within GFF2870 at 295.782 kb on + strand at 295.839 kb on + strand at 295.839 kb on + strand at 295.839 kb on + strand at 295.839 kb on + strand at 295.839 kb on + strand at 295.839 kb on + strand at 295.840 kb on - strand at 295.840 kb on - strand at 295.840 kb on - strand at 295.881 kb on + strand at 295.881 kb on + strand at 295.881 kb on + strand at 295.881 kb on + strand at 295.881 kb on + strand at 295.882 kb on - strand at 295.958 kb on + strand at 295.959 kb on - strand at 296.294 kb on + strand at 296.294 kb on + strand at 296.432 kb on + strand, within GFF2872 at 296.432 kb on + strand, within GFF2872 at 296.432 kb on + strand, within GFF2872 at 296.432 kb on + strand, within GFF2872 at 296.432 kb on + strand, within GFF2872 at 296.432 kb on + strand, within GFF2872 at 296.432 kb on + strand, within GFF2872 at 296.432 kb on + strand, within GFF2872 at 296.432 kb on + strand, within GFF2872 at 296.432 kb on + strand, within GFF2872 at 296.433 kb on - strand, within GFF2872 at 296.433 kb on - strand, within GFF2872 at 296.433 kb on - strand, within GFF2872 at 296.433 kb on - strand, within GFF2872 at 296.433 kb on - strand, within GFF2872 at 296.433 kb on - strand, within GFF2872 at 296.433 kb on - strand, within GFF2872 at 296.433 kb on - strand, within GFF2872 at 296.465 kb on + strand, within GFF2872 at 296.465 kb on + strand, within GFF2872 at 296.465 kb on + strand, within GFF2872 at 296.465 kb on + strand, within GFF2872 at 296.465 kb on + strand, within GFF2872 at 296.466 kb on - strand, within GFF2872 at 296.466 kb on - strand, within GFF2872 at 296.466 kb on - strand, within GFF2872 at 296.576 kb on + strand, within GFF2872 at 296.576 kb on + strand, within GFF2872 at 296.576 kb on + strand, within GFF2872 at 296.576 kb on + strand, within GFF2872 at 296.577 kb on - strand, within GFF2872 at 296.577 kb on - strand, within GFF2872 at 296.577 kb on - strand, within GFF2872 at 296.577 kb on - strand, within GFF2872 at 296.633 kb on + strand, within GFF2872 at 296.633 kb on + strand, within GFF2872 at 296.633 kb on + strand, within GFF2872 at 296.633 kb on + strand, within GFF2872 at 296.633 kb on + strand, within GFF2872 at 296.633 kb on + strand, within GFF2872 at 296.633 kb on + strand, within GFF2872 at 296.633 kb on + strand, within GFF2872 at 296.633 kb on + strand, within GFF2872 at 296.634 kb on - strand, within GFF2872 at 296.634 kb on - strand, within GFF2872 at 296.634 kb on - strand, within GFF2872 at 296.634 kb on - strand, within GFF2872 at 296.648 kb on + strand, within GFF2872 at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.756 kb on + strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.757 kb on - strand at 296.758 kb on - strand at 296.763 kb on + strand at 296.763 kb on + strand at 296.763 kb on + strand at 296.771 kb on + strand at 296.771 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 294,613 - +0.6 294,617 + +0.6 294,617 + -0.6 294,618 - -0.5 294,618 - -0.4 294,645 + -2.4 294,645 + -1.3 294,645 + +1.7 294,693 + -3.2 294,694 - -1.1 294,694 - -4.6 294,694 - -1.7 294,702 + +0.3 294,702 + -3.2 294,702 + -0.7 294,703 - -3.1 294,703 - -3.2 294,703 - -2.5 294,703 - -1.6 294,703 - +0.9 294,703 - -2.7 294,804 + GFF2870 0.12 -0.9 294,804 + GFF2870 0.12 -1.7 294,804 + GFF2870 0.12 -2.3 294,873 + GFF2870 0.18 -2.5 294,874 - GFF2870 0.18 -1.3 294,954 + GFF2870 0.25 -3.3 294,954 + GFF2870 0.25 -3.6 294,955 - GFF2870 0.25 -1.3 294,955 - GFF2870 0.25 -0.9 294,955 - GFF2870 0.25 -4.7 294,955 - GFF2870 0.25 -1.5 295,032 + GFF2870 0.31 -2.0 295,032 + GFF2870 0.31 -3.7 295,032 + GFF2870 0.31 -3.7 295,032 + GFF2870 0.31 -2.6 295,032 + GFF2870 0.31 -2.0 295,032 + GFF2870 0.31 -0.4 295,033 - GFF2870 0.31 -3.2 295,033 - GFF2870 0.31 -3.5 295,033 - GFF2870 0.31 -2.6 295,033 - GFF2870 0.31 -2.8 295,033 - GFF2870 0.31 -2.3 295,068 + GFF2870 0.34 -2.7 295,068 + GFF2870 0.34 -0.7 295,069 - GFF2870 0.34 -2.0 295,069 - GFF2870 0.34 -2.4 295,069 - GFF2870 0.34 -2.7 295,105 - GFF2870 0.37 -3.2 295,182 + GFF2870 0.43 -0.9 295,182 + GFF2870 0.43 -3.0 295,182 + GFF2870 0.43 -3.9 295,183 - GFF2870 0.43 -3.5 295,230 + GFF2870 0.47 -4.2 295,230 + GFF2870 0.47 -4.3 295,230 + GFF2870 0.47 -3.2 295,230 + GFF2870 0.47 -4.9 295,230 + GFF2870 0.47 -3.7 295,230 + GFF2870 0.47 -0.1 295,231 - GFF2870 0.47 -3.1 295,231 - GFF2870 0.47 -1.7 295,231 - GFF2870 0.47 -4.3 295,231 - GFF2870 0.47 -2.1 295,231 - GFF2870 0.47 -3.4 295,231 - GFF2870 0.47 -4.7 295,231 - GFF2870 0.47 -4.2 295,378 - GFF2870 0.59 -2.8 295,437 - GFF2870 0.64 -0.9 295,488 + GFF2870 0.68 -3.3 295,488 + GFF2870 0.68 -2.1 295,489 - GFF2870 0.68 -2.3 295,489 - GFF2870 0.68 -0.5 295,489 - GFF2870 0.68 -0.1 295,489 - GFF2870 0.68 -1.9 295,599 + GFF2870 0.77 -4.1 295,599 + GFF2870 0.77 -1.1 295,599 + GFF2870 0.77 -2.2 295,599 + GFF2870 0.77 -4.2 295,599 + GFF2870 0.77 -2.5 295,599 + GFF2870 0.77 -1.5 295,599 + GFF2870 0.77 +2.5 295,599 + GFF2870 0.77 -4.5 295,600 - GFF2870 0.78 -2.6 295,600 - GFF2870 0.78 -1.0 295,600 - GFF2870 0.78 -1.1 295,600 - GFF2870 0.78 -3.4 295,600 - GFF2870 0.78 -3.8 295,671 + GFF2870 0.83 -3.1 295,671 + GFF2870 0.83 -2.9 295,672 - GFF2870 0.83 +0.3 295,672 - GFF2870 0.83 -3.8 295,672 - GFF2870 0.83 +0.4 295,782 + -1.8 295,839 + -4.6 295,839 + -5.6 295,839 + -0.1 295,839 + -2.5 295,839 + -4.6 295,839 + +0.9 295,840 - -0.8 295,840 - -4.6 295,840 - -3.8 295,881 + +0.0 295,881 + -3.1 295,881 + -0.3 295,881 + -0.9 295,881 + -0.2 295,882 - -1.5 295,958 + -2.6 295,959 - +0.3 296,294 + -0.1 296,294 + -0.1 296,432 + GFF2872 0.20 -0.3 296,432 + GFF2872 0.20 -1.9 296,432 + GFF2872 0.20 -1.0 296,432 + GFF2872 0.20 -2.0 296,432 + GFF2872 0.20 +1.9 296,432 + GFF2872 0.20 +0.4 296,432 + GFF2872 0.20 +0.0 296,432 + GFF2872 0.20 -1.0 296,432 + GFF2872 0.20 -1.0 296,432 + GFF2872 0.20 -0.2 296,433 - GFF2872 0.20 -0.5 296,433 - GFF2872 0.20 +0.4 296,433 - GFF2872 0.20 +0.9 296,433 - GFF2872 0.20 -3.3 296,433 - GFF2872 0.20 +1.1 296,433 - GFF2872 0.20 -0.9 296,433 - GFF2872 0.20 -0.1 296,433 - GFF2872 0.20 -0.5 296,465 + GFF2872 0.28 -2.3 296,465 + GFF2872 0.28 -0.8 296,465 + GFF2872 0.28 +0.9 296,465 + GFF2872 0.28 -0.7 296,465 + GFF2872 0.28 -0.7 296,466 - GFF2872 0.28 -3.2 296,466 - GFF2872 0.28 +1.2 296,466 - GFF2872 0.28 +5.2 296,576 + GFF2872 0.55 +4.2 296,576 + GFF2872 0.55 -1.0 296,576 + GFF2872 0.55 -0.6 296,576 + GFF2872 0.55 -0.1 296,577 - GFF2872 0.55 -2.3 296,577 - GFF2872 0.55 -1.0 296,577 - GFF2872 0.55 -1.9 296,577 - GFF2872 0.55 -0.5 296,633 + GFF2872 0.69 -1.6 296,633 + GFF2872 0.69 +0.0 296,633 + GFF2872 0.69 +0.2 296,633 + GFF2872 0.69 -1.1 296,633 + GFF2872 0.69 +1.5 296,633 + GFF2872 0.69 -0.5 296,633 + GFF2872 0.69 +0.1 296,633 + GFF2872 0.69 -0.2 296,633 + GFF2872 0.69 -0.5 296,634 - GFF2872 0.69 +0.6 296,634 - GFF2872 0.69 -0.1 296,634 - GFF2872 0.69 -0.3 296,634 - GFF2872 0.69 -0.8 296,648 + GFF2872 0.73 +0.2 296,756 + -1.2 296,756 + +0.7 296,756 + +0.5 296,756 + -1.5 296,756 + -2.0 296,756 + -1.7 296,756 + +0.2 296,756 + +0.0 296,756 + +1.9 296,756 + +0.1 296,756 + +2.0 296,756 + +0.3 296,756 + +3.5 296,756 + +0.6 296,756 + +1.4 296,757 - +5.3 296,757 - +0.5 296,757 - -2.8 296,757 - +1.1 296,757 - -1.7 296,757 - +0.5 296,757 - -0.0 296,757 - -2.7 296,757 - +0.3 296,757 - -1.5 296,757 - -0.7 296,757 - -0.5 296,757 - +0.8 296,757 - +0.9 296,758 - -1.9 296,763 + -3.4 296,763 + -1.2 296,763 + -2.3 296,771 + -1.3 296,771 + +2.5
Or see this region's nucleotide sequence