Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2800 and GFF2801 are separated by 38 nucleotides GFF2801 and GFF2802 overlap by 4 nucleotides
GFF2800 - Threonine synthase (EC 4.2.3.1), at 228,802 to 230,217
GFF2800
GFF2801 - Homoserine dehydrogenase (EC 1.1.1.3), at 230,256 to 231,605
GFF2801
GFF2802 - DUF1176 domain-containing protein, at 231,602 to 232,636
GFF2802
Position (kb) 230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 230.515 kb on + strand, within GFF2801 at 230.518 kb on + strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.519 kb on - strand, within GFF2801 at 230.689 kb on + strand, within GFF2801 at 230.690 kb on - strand, within GFF2801 at 230.692 kb on + strand, within GFF2801 at 230.693 kb on - strand, within GFF2801 at 230.693 kb on - strand, within GFF2801 at 230.693 kb on - strand, within GFF2801 at 230.693 kb on - strand, within GFF2801 at 230.693 kb on - strand, within GFF2801 at 231.332 kb on - strand, within GFF2801 at 231.561 kb on + strand at 231.561 kb on + strand at 231.561 kb on + strand at 231.561 kb on + strand at 231.561 kb on + strand at 231.562 kb on - strand at 231.562 kb on - strand at 231.654 kb on + strand at 231.655 kb on - strand at 231.655 kb on - strand at 231.856 kb on - strand, within GFF2802 at 231.856 kb on - strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 232.459 kb on + strand, within GFF2802 at 232.459 kb on + strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 230,515 + GFF2801 0.19 +0.9 230,518 + GFF2801 0.19 +1.9 230,519 - GFF2801 0.19 +0.3 230,519 - GFF2801 0.19 -0.0 230,519 - GFF2801 0.19 -2.4 230,519 - GFF2801 0.19 -2.6 230,519 - GFF2801 0.19 -0.2 230,519 - GFF2801 0.19 -0.4 230,519 - GFF2801 0.19 -0.4 230,519 - GFF2801 0.19 -1.6 230,519 - GFF2801 0.19 -2.3 230,519 - GFF2801 0.19 -0.6 230,519 - GFF2801 0.19 -0.1 230,519 - GFF2801 0.19 +0.9 230,519 - GFF2801 0.19 -0.3 230,519 - GFF2801 0.19 -3.0 230,519 - GFF2801 0.19 -0.9 230,689 + GFF2801 0.32 +1.9 230,690 - GFF2801 0.32 -0.4 230,692 + GFF2801 0.32 -0.1 230,693 - GFF2801 0.32 -0.2 230,693 - GFF2801 0.32 -1.1 230,693 - GFF2801 0.32 -0.1 230,693 - GFF2801 0.32 -1.1 230,693 - GFF2801 0.32 -1.4 231,332 - GFF2801 0.80 -1.2 231,561 + -2.2 231,561 + -2.3 231,561 + -1.3 231,561 + -2.2 231,561 + +0.6 231,562 - -2.5 231,562 - -2.1 231,654 + +0.3 231,655 - -0.9 231,655 - +0.3 231,856 - GFF2802 0.25 -0.6 231,856 - GFF2802 0.25 -1.4 231,894 + GFF2802 0.28 +0.1 231,894 + GFF2802 0.28 -0.4 231,894 + GFF2802 0.28 +0.9 231,894 + GFF2802 0.28 +0.3 231,894 + GFF2802 0.28 -3.1 231,894 + GFF2802 0.28 +0.1 231,894 + GFF2802 0.28 -0.1 231,894 + GFF2802 0.28 -0.9 231,894 + GFF2802 0.28 -3.0 231,895 - GFF2802 0.28 +0.6 231,895 - GFF2802 0.28 -0.2 231,895 - GFF2802 0.28 -2.9 231,895 - GFF2802 0.28 -2.4 231,895 - GFF2802 0.28 -0.8 231,895 - GFF2802 0.28 +1.6 231,895 - GFF2802 0.28 -0.4 231,895 - GFF2802 0.28 -1.6 231,895 - GFF2802 0.28 -0.1 231,895 - GFF2802 0.28 -2.4 231,895 - GFF2802 0.28 -2.5 231,900 + GFF2802 0.29 -1.1 231,900 + GFF2802 0.29 -1.3 231,900 + GFF2802 0.29 +2.1 231,900 + GFF2802 0.29 -0.6 231,901 - GFF2802 0.29 +0.8 231,901 - GFF2802 0.29 -1.3 231,901 - GFF2802 0.29 -0.1 231,901 - GFF2802 0.29 -1.8 231,901 - GFF2802 0.29 -2.8 231,901 - GFF2802 0.29 +1.3 231,901 - GFF2802 0.29 +1.0 231,901 - GFF2802 0.29 -0.3 231,901 - GFF2802 0.29 +0.1 232,459 + GFF2802 0.83 +2.9 232,459 + GFF2802 0.83 -0.1 232,460 - GFF2802 0.83 -1.3 232,460 - GFF2802 0.83 -0.0 232,460 - GFF2802 0.83 +0.1 232,460 - GFF2802 0.83 -2.2 232,460 - GFF2802 0.83 +0.5 232,460 - GFF2802 0.83 -0.6 232,460 - GFF2802 0.83 -0.0
Or see this region's nucleotide sequence