Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2792 and GFF2793 are separated by 109 nucleotides GFF2793 and GFF2794 overlap by 4 nucleotides GFF2794 and GFF2795 are separated by 27 nucleotides GFF2795 and GFF2796 are separated by 122 nucleotides
GFF2792 - Chaperone protein ClpB (ATP-dependent unfoldase), at 221,350 to 223,971
GFF2792
GFF2793 - Tricarboxylate transport protein TctC, at 224,081 to 225,073
GFF2793
GFF2794 - Molybdopterin synthase catalytic subunit MoaE (EC 2.8.1.12), at 225,070 to 225,546
GFF2794
GFF2795 - no description, at 225,574 to 225,687
GFF2795
GFF2796 - Dihydrodipicolinate synthase family protein PP2639, at 225,810 to 226,706
GFF2796
Position (kb) 224
225
226 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 223.321 kb on + strand, within GFF2792 at 223.322 kb on - strand, within GFF2792 at 223.335 kb on + strand, within GFF2792 at 223.487 kb on + strand, within GFF2792 at 223.487 kb on + strand, within GFF2792 at 223.487 kb on + strand, within GFF2792 at 223.488 kb on - strand, within GFF2792 at 223.889 kb on + strand at 223.889 kb on + strand at 223.889 kb on + strand at 223.889 kb on + strand at 223.889 kb on + strand at 223.889 kb on + strand at 223.889 kb on + strand at 223.890 kb on - strand at 223.890 kb on - strand at 223.890 kb on - strand at 223.890 kb on - strand at 223.890 kb on - strand at 223.890 kb on - strand at 223.995 kb on - strand at 223.995 kb on - strand at 224.389 kb on - strand, within GFF2793 at 224.391 kb on - strand, within GFF2793 at 224.522 kb on + strand, within GFF2793 at 224.522 kb on + strand, within GFF2793 at 224.523 kb on - strand, within GFF2793 at 224.523 kb on - strand, within GFF2793 at 224.523 kb on - strand, within GFF2793 at 224.523 kb on - strand, within GFF2793 at 224.523 kb on - strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.625 kb on - strand, within GFF2793 at 224.625 kb on - strand, within GFF2793 at 224.625 kb on - strand, within GFF2793 at 224.625 kb on - strand, within GFF2793 at 224.625 kb on - strand, within GFF2793 at 224.852 kb on + strand, within GFF2793 at 224.852 kb on + strand, within GFF2793 at 224.852 kb on + strand, within GFF2793 at 224.852 kb on + strand, within GFF2793 at 224.853 kb on - strand, within GFF2793 at 224.853 kb on - strand, within GFF2793 at 224.853 kb on - strand, within GFF2793 at 224.855 kb on + strand, within GFF2793 at 224.855 kb on + strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.903 kb on + strand, within GFF2793 at 224.903 kb on + strand, within GFF2793 at 224.903 kb on + strand, within GFF2793 at 224.903 kb on + strand, within GFF2793 at 224.904 kb on - strand, within GFF2793 at 224.904 kb on - strand, within GFF2793 at 224.904 kb on - strand, within GFF2793 at 224.981 kb on + strand at 224.982 kb on - strand at 224.982 kb on - strand at 225.020 kb on + strand at 225.020 kb on + strand at 225.020 kb on + strand at 225.020 kb on + strand at 225.020 kb on + strand at 225.021 kb on - strand at 225.021 kb on - strand at 225.021 kb on - strand at 225.071 kb on + strand at 225.071 kb on + strand at 225.071 kb on + strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.194 kb on + strand, within GFF2794 at 225.194 kb on + strand, within GFF2794 at 225.194 kb on + strand, within GFF2794 at 225.194 kb on + strand, within GFF2794 at 225.195 kb on - strand, within GFF2794 at 225.195 kb on - strand, within GFF2794 at 225.195 kb on - strand, within GFF2794 at 225.381 kb on - strand, within GFF2794 at 225.381 kb on - strand, within GFF2794 at 225.568 kb on + strand at 225.569 kb on - strand at 225.569 kb on - strand at 225.834 kb on - strand at 225.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 223,321 + GFF2792 0.75 -1.9 223,322 - GFF2792 0.75 -3.4 223,335 + GFF2792 0.76 -0.7 223,487 + GFF2792 0.82 -2.7 223,487 + GFF2792 0.82 -4.0 223,487 + GFF2792 0.82 -2.6 223,488 - GFF2792 0.82 -0.0 223,889 + -1.7 223,889 + +0.4 223,889 + -1.1 223,889 + +0.9 223,889 + -2.2 223,889 + -1.4 223,889 + +2.5 223,890 - +0.4 223,890 - -1.6 223,890 - -0.7 223,890 - +1.3 223,890 - +0.7 223,890 - -0.1 223,995 - -1.9 223,995 - +1.9 224,389 - GFF2793 0.31 -1.1 224,391 - GFF2793 0.31 +0.4 224,522 + GFF2793 0.44 -2.8 224,522 + GFF2793 0.44 -1.1 224,523 - GFF2793 0.45 -1.6 224,523 - GFF2793 0.45 -1.7 224,523 - GFF2793 0.45 +1.2 224,523 - GFF2793 0.45 -1.4 224,523 - GFF2793 0.45 -3.7 224,624 + GFF2793 0.55 -0.7 224,624 + GFF2793 0.55 -1.1 224,624 + GFF2793 0.55 -2.7 224,624 + GFF2793 0.55 -0.1 224,624 + GFF2793 0.55 -1.9 224,624 + GFF2793 0.55 -0.9 224,624 + GFF2793 0.55 +0.4 224,624 + GFF2793 0.55 +1.9 224,624 + GFF2793 0.55 -1.1 224,624 + GFF2793 0.55 -3.1 224,624 + GFF2793 0.55 +1.9 224,625 - GFF2793 0.55 -2.0 224,625 - GFF2793 0.55 -1.7 224,625 - GFF2793 0.55 +0.2 224,625 - GFF2793 0.55 -2.4 224,625 - GFF2793 0.55 -0.9 224,852 + GFF2793 0.78 -0.3 224,852 + GFF2793 0.78 -0.7 224,852 + GFF2793 0.78 -1.4 224,852 + GFF2793 0.78 -0.0 224,853 - GFF2793 0.78 +0.9 224,853 - GFF2793 0.78 -0.1 224,853 - GFF2793 0.78 -0.4 224,855 + GFF2793 0.78 +0.9 224,855 + GFF2793 0.78 -0.9 224,856 - GFF2793 0.78 -2.9 224,856 - GFF2793 0.78 -1.1 224,856 - GFF2793 0.78 -1.6 224,856 - GFF2793 0.78 +0.7 224,856 - GFF2793 0.78 +0.4 224,856 - GFF2793 0.78 -3.1 224,856 - GFF2793 0.78 +2.1 224,903 + GFF2793 0.83 -2.4 224,903 + GFF2793 0.83 +0.4 224,903 + GFF2793 0.83 +1.3 224,903 + GFF2793 0.83 +2.2 224,904 - GFF2793 0.83 -0.1 224,904 - GFF2793 0.83 -2.4 224,904 - GFF2793 0.83 +4.1 224,981 + +0.3 224,982 - +0.1 224,982 - +0.3 225,020 + -1.1 225,020 + -0.3 225,020 + +2.3 225,020 + -1.7 225,020 + +1.4 225,021 - -1.1 225,021 - +1.1 225,021 - -2.5 225,071 + -0.5 225,071 + -3.3 225,071 + +0.3 225,072 - +0.3 225,072 - -0.4 225,072 - -1.6 225,072 - -2.2 225,072 - +0.6 225,072 - -1.5 225,194 + GFF2794 0.26 +1.1 225,194 + GFF2794 0.26 +1.9 225,194 + GFF2794 0.26 +1.0 225,194 + GFF2794 0.26 -0.2 225,195 - GFF2794 0.26 -0.8 225,195 - GFF2794 0.26 -0.1 225,195 - GFF2794 0.26 -0.8 225,381 - GFF2794 0.65 +1.9 225,381 - GFF2794 0.65 -0.9 225,568 + -0.7 225,569 - -0.7 225,569 - +0.6 225,834 - -0.1 225,834 - +2.0
Or see this region's nucleotide sequence