Strain Fitness in Variovorax sp. SCN45 around GFF268

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF266 and GFF267 are separated by 71 nucleotidesGFF267 and GFF268 are separated by 63 nucleotidesGFF268 and GFF269 are separated by 39 nucleotides GFF266 - RND efflux system, inner membrane transporter, at 298,952 to 302,038 GFF266 GFF267 - no description, at 302,110 to 302,352 GFF267 GFF268 - Carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23), at 302,416 to 303,279 GFF268 GFF269 - 2-methylaconitate isomerase, at 303,319 to 304,509 GFF269 Position (kb) 302 303 304Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 301.439 kb on + strand, within GFF266at 301.439 kb on + strand, within GFF266at 301.439 kb on + strand, within GFF266at 301.440 kb on - strand, within GFF266at 301.440 kb on - strand, within GFF266at 301.440 kb on - strand, within GFF266at 301.440 kb on - strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.937 kb on + strandat 301.937 kb on + strandat 301.937 kb on + strandat 301.937 kb on + strandat 301.937 kb on + strandat 301.937 kb on + strandat 301.938 kb on - strandat 301.938 kb on - strandat 301.938 kb on - strandat 301.938 kb on - strandat 302.124 kb on - strandat 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.214 kb on - strand, within GFF267at 302.214 kb on - strand, within GFF267at 302.214 kb on - strand, within GFF267at 302.214 kb on - strand, within GFF267at 302.214 kb on - strand, within GFF267at 302.270 kb on + strand, within GFF267at 302.270 kb on + strand, within GFF267at 302.270 kb on + strand, within GFF267at 302.270 kb on + strand, within GFF267at 302.271 kb on - strand, within GFF267at 302.271 kb on - strand, within GFF267at 302.405 kb on + strandat 302.427 kb on - strandat 302.488 kb on + strandat 302.489 kb on - strandat 302.489 kb on - strandat 302.489 kb on - strandat 302.489 kb on - strandat 302.588 kb on + strand, within GFF268at 302.588 kb on + strand, within GFF268at 302.589 kb on - strand, within GFF268at 302.589 kb on - strand, within GFF268at 302.604 kb on - strand, within GFF268at 303.161 kb on + strand, within GFF268at 303.161 kb on + strand, within GFF268at 303.161 kb on + strand, within GFF268at 303.161 kb on + strand, within GFF268at 303.161 kb on + strand, within GFF268at 303.161 kb on + strand, within GFF268at 303.161 kb on + strand, within GFF268at 303.162 kb on - strand, within GFF268at 303.162 kb on - strand, within GFF268at 303.162 kb on - strand, within GFF268at 303.162 kb on - strand, within GFF268at 303.162 kb on - strand, within GFF268at 303.162 kb on - strand, within GFF268at 303.162 kb on - strand, within GFF268at 303.162 kb on - strand, within GFF268at 303.162 kb on - strand, within GFF268at 303.162 kb on - strand, within GFF268at 303.294 kb on + strandat 303.294 kb on + strandat 303.294 kb on + strandat 303.294 kb on + strandat 303.295 kb on - strandat 303.295 kb on - strandat 303.295 kb on - strandat 303.295 kb on - strandat 303.295 kb on - strandat 303.312 kb on + strandat 303.313 kb on - strandat 303.313 kb on - strandat 303.648 kb on - strand, within GFF269at 303.819 kb on - strand, within GFF269at 304.253 kb on + strand, within GFF269at 304.253 kb on + strand, within GFF269at 304.253 kb on + strand, within GFF269at 304.253 kb on + strand, within GFF269at 304.254 kb on - strand, within GFF269at 304.254 kb on - strand, within GFF269at 304.254 kb on - strand, within GFF269at 304.254 kb on - strand, within GFF269at 304.254 kb on - strand, within GFF269at 304.254 kb on - strand, within GFF269at 304.254 kb on - strand, within GFF269at 304.254 kb on - strand, within GFF269

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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301,439 + GFF266 0.81 +1.0
301,439 + GFF266 0.81 -1.7
301,439 + GFF266 0.81 +2.0
301,440 - GFF266 0.81 -1.2
301,440 - GFF266 0.81 -0.9
301,440 - GFF266 0.81 +0.0
301,440 - GFF266 0.81 +1.4
301,640 + GFF266 0.87 -1.2
301,640 + GFF266 0.87 +0.0
301,640 + GFF266 0.87 -2.4
301,640 + GFF266 0.87 -2.1
301,640 + GFF266 0.87 -2.0
301,640 + GFF266 0.87 -2.2
301,640 + GFF266 0.87 +0.1
301,640 + GFF266 0.87 +0.0
301,641 - GFF266 0.87 -1.0
301,641 - GFF266 0.87 -1.1
301,641 - GFF266 0.87 +1.4
301,641 - GFF266 0.87 -1.3
301,641 - GFF266 0.87 +0.8
301,641 - GFF266 0.87 -0.5
301,641 - GFF266 0.87 +0.5
301,937 + -0.4
301,937 + -1.4
301,937 + +0.7
301,937 + -0.3
301,937 + -1.2
301,937 + +0.0
301,938 - -3.7
301,938 - -1.2
301,938 - -1.1
301,938 - +1.2
302,124 - -2.0
302,213 + GFF267 0.42 -2.5
302,213 + GFF267 0.42 +1.5
302,213 + GFF267 0.42 -2.4
302,213 + GFF267 0.42 -3.0
302,213 + GFF267 0.42 -0.4
302,213 + GFF267 0.42 -0.7
302,213 + GFF267 0.42 +0.5
302,213 + GFF267 0.42 -1.4
302,214 - GFF267 0.43 +0.0
302,214 - GFF267 0.43 -1.9
302,214 - GFF267 0.43 +0.7
302,214 - GFF267 0.43 +1.3
302,214 - GFF267 0.43 +1.2
302,270 + GFF267 0.66 -1.2
302,270 + GFF267 0.66 -0.2
302,270 + GFF267 0.66 -0.2
302,270 + GFF267 0.66 +1.4
302,271 - GFF267 0.66 -2.1
302,271 - GFF267 0.66 +1.6
302,405 + -0.5
302,427 - +0.6
302,488 + -0.4
302,489 - -1.6
302,489 - +0.0
302,489 - -1.2
302,489 - -2.7
302,588 + GFF268 0.20 -3.1
302,588 + GFF268 0.20 -1.9
302,589 - GFF268 0.20 -4.2
302,589 - GFF268 0.20 -2.9
302,604 - GFF268 0.22 -1.7
303,161 + GFF268 0.86 -1.9
303,161 + GFF268 0.86 -2.8
303,161 + GFF268 0.86 -0.4
303,161 + GFF268 0.86 -1.0
303,161 + GFF268 0.86 -0.7
303,161 + GFF268 0.86 -1.6
303,161 + GFF268 0.86 -2.3
303,162 - GFF268 0.86 -3.6
303,162 - GFF268 0.86 -4.4
303,162 - GFF268 0.86 -1.4
303,162 - GFF268 0.86 -0.4
303,162 - GFF268 0.86 -3.0
303,162 - GFF268 0.86 -2.0
303,162 - GFF268 0.86 -3.8
303,162 - GFF268 0.86 -3.5
303,162 - GFF268 0.86 -3.6
303,162 - GFF268 0.86 -4.1
303,294 + -1.6
303,294 + -1.9
303,294 + -1.9
303,294 + -3.0
303,295 - -0.9
303,295 - -2.4
303,295 - -1.6
303,295 - -0.4
303,295 - -1.4
303,312 + +1.7
303,313 - +1.6
303,313 - -3.6
303,648 - GFF269 0.28 -5.2
303,819 - GFF269 0.42 -1.0
304,253 + GFF269 0.78 -1.7
304,253 + GFF269 0.78 -2.1
304,253 + GFF269 0.78 -4.2
304,253 + GFF269 0.78 -3.7
304,254 - GFF269 0.79 +0.0
304,254 - GFF269 0.79 -5.2
304,254 - GFF269 0.79 -2.9
304,254 - GFF269 0.79 -1.2
304,254 - GFF269 0.79 -0.3
304,254 - GFF269 0.79 -2.9
304,254 - GFF269 0.79 -2.0
304,254 - GFF269 0.79 -3.1

Or see this region's nucleotide sequence