Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2570 and GFF2571 are separated by 20 nucleotides GFF2571 and GFF2572 are separated by 127 nucleotides GFF2572 and GFF2573 are separated by 24 nucleotides GFF2573 and GFF2574 are separated by 26 nucleotides GFF2574 and GFF2575 are separated by 11 nucleotides
GFF2570 - Rhodanese-related sulfurtransferase YibN, at 629,133 to 629,549
GFF2570
GFF2571 - Glutaredoxin 3 (Grx3), at 629,570 to 629,830
GFF2571
GFF2572 - Protein-export protein SecB (maintains pre-export unfolded state), at 629,958 to 630,422
GFF2572
GFF2573 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 630,447 to 631,481
GFF2573
GFF2574 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 631,508 to 632,386
GFF2574
GFF2575 - Quinolinate synthetase (EC 2.5.1.72), at 632,398 to 633,534
GFF2575
Position (kb) 630
631
632 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 629.475 kb on + strand, within GFF2570 at 629.476 kb on - strand, within GFF2570 at 629.476 kb on - strand, within GFF2570 at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.569 kb on + strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.570 kb on - strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.588 kb on + strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.589 kb on - strand at 629.609 kb on + strand, within GFF2571 at 629.662 kb on - strand, within GFF2571 at 629.877 kb on + strand at 629.889 kb on + strand at 629.889 kb on + strand at 629.889 kb on + strand at 629.889 kb on + strand at 629.889 kb on + strand at 629.889 kb on + strand at 629.890 kb on - strand at 629.890 kb on - strand at 629.890 kb on - strand at 630.006 kb on + strand, within GFF2572 at 630.006 kb on + strand, within GFF2572 at 630.006 kb on + strand, within GFF2572 at 630.006 kb on + strand, within GFF2572 at 630.007 kb on - strand, within GFF2572 at 630.007 kb on - strand, within GFF2572 at 630.282 kb on + strand, within GFF2572 at 630.282 kb on + strand, within GFF2572 at 630.282 kb on + strand, within GFF2572 at 630.282 kb on + strand, within GFF2572 at 630.282 kb on + strand, within GFF2572 at 630.282 kb on + strand, within GFF2572 at 630.283 kb on - strand, within GFF2572 at 630.283 kb on - strand, within GFF2572 at 630.283 kb on - strand, within GFF2572 at 630.283 kb on - strand, within GFF2572 at 630.283 kb on - strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.366 kb on + strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.367 kb on - strand, within GFF2572 at 630.420 kb on + strand at 630.420 kb on + strand at 630.420 kb on + strand at 630.420 kb on + strand at 630.420 kb on + strand at 630.421 kb on - strand at 630.421 kb on - strand at 630.421 kb on - strand at 630.421 kb on - strand at 630.421 kb on - strand at 630.421 kb on - strand at 630.421 kb on - strand at 630.585 kb on + strand, within GFF2573 at 630.585 kb on + strand, within GFF2573 at 630.585 kb on + strand, within GFF2573 at 630.586 kb on - strand, within GFF2573 at 630.586 kb on - strand, within GFF2573 at 630.975 kb on + strand, within GFF2573 at 630.975 kb on + strand, within GFF2573 at 630.975 kb on + strand, within GFF2573 at 630.975 kb on + strand, within GFF2573 at 630.975 kb on + strand, within GFF2573 at 630.975 kb on + strand, within GFF2573 at 630.976 kb on - strand, within GFF2573 at 630.976 kb on - strand, within GFF2573 at 630.976 kb on - strand, within GFF2573 at 630.976 kb on - strand, within GFF2573 at 630.976 kb on - strand, within GFF2573 at 631.299 kb on + strand, within GFF2573 at 631.299 kb on + strand, within GFF2573 at 631.299 kb on + strand, within GFF2573 at 631.299 kb on + strand, within GFF2573 at 631.299 kb on + strand, within GFF2573 at 631.299 kb on + strand, within GFF2573 at 631.299 kb on + strand, within GFF2573 at 631.299 kb on + strand, within GFF2573 at 631.299 kb on + strand, within GFF2573 at 631.299 kb on + strand, within GFF2573 at 631.300 kb on - strand, within GFF2573 at 631.300 kb on - strand, within GFF2573 at 631.300 kb on - strand, within GFF2573 at 631.300 kb on - strand, within GFF2573 at 631.300 kb on - strand, within GFF2573 at 631.300 kb on - strand, within GFF2573 at 631.300 kb on - strand, within GFF2573 at 631.300 kb on - strand, within GFF2573 at 631.880 kb on + strand, within GFF2574 at 631.880 kb on + strand, within GFF2574 at 631.881 kb on - strand, within GFF2574 at 631.961 kb on + strand, within GFF2574 at 631.961 kb on + strand, within GFF2574 at 631.962 kb on - strand, within GFF2574 at 631.962 kb on - strand, within GFF2574 at 631.962 kb on - strand, within GFF2574 at 632.006 kb on + strand, within GFF2574 at 632.006 kb on + strand, within GFF2574 at 632.006 kb on + strand, within GFF2574 at 632.007 kb on - strand, within GFF2574 at 632.007 kb on - strand, within GFF2574 at 632.007 kb on - strand, within GFF2574 at 632.317 kb on + strand at 632.317 kb on + strand at 632.318 kb on - strand at 632.318 kb on - strand at 632.318 kb on - strand at 632.318 kb on - strand at 632.360 kb on + strand at 632.360 kb on + strand at 632.361 kb on - strand at 632.361 kb on - strand at 632.428 kb on + strand at 632.429 kb on - strand at 632.429 kb on - strand at 632.429 kb on - strand at 632.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 629,475 + GFF2570 0.82 +0.0 629,476 - GFF2570 0.82 -0.1 629,476 - GFF2570 0.82 -0.6 629,569 + +0.7 629,569 + +0.4 629,569 + -0.3 629,569 + -0.8 629,569 + -0.3 629,569 + -1.0 629,569 + +0.8 629,569 + -0.8 629,569 + -1.4 629,569 + +0.8 629,569 + -1.1 629,569 + -0.8 629,569 + +2.7 629,569 + -2.2 629,569 + -2.2 629,569 + -1.1 629,569 + +0.2 629,569 + -0.8 629,570 - +1.7 629,570 - +3.5 629,570 - -2.0 629,570 - -0.8 629,570 - -3.0 629,570 - -1.8 629,570 - -1.2 629,570 - +0.5 629,570 - -1.8 629,570 - -0.8 629,570 - +0.5 629,570 - +0.8 629,570 - +0.5 629,570 - +0.4 629,570 - -3.8 629,570 - +0.4 629,588 + +0.2 629,588 + +0.3 629,588 + -0.5 629,588 + +0.0 629,588 + -1.3 629,588 + +0.9 629,588 + -4.3 629,588 + +0.8 629,588 + +1.3 629,588 + -1.4 629,588 + -2.7 629,588 + -2.0 629,588 + -0.4 629,588 + -1.8 629,588 + -0.5 629,588 + -0.5 629,588 + +2.1 629,588 + -1.8 629,588 + -2.3 629,588 + -0.9 629,588 + -0.3 629,588 + -0.5 629,588 + +1.0 629,588 + +3.4 629,588 + +1.9 629,588 + +0.5 629,589 - +0.3 629,589 - -0.5 629,589 - -2.2 629,589 - +0.7 629,589 - -1.5 629,589 - -1.5 629,589 - +0.7 629,589 - -0.3 629,589 - -0.2 629,589 - -1.4 629,589 - +0.1 629,589 - +4.2 629,589 - +0.3 629,589 - -4.5 629,589 - +0.5 629,589 - -2.0 629,589 - +1.3 629,589 - +1.7 629,589 - -0.3 629,589 - +0.6 629,609 + GFF2571 0.15 +1.5 629,662 - GFF2571 0.35 -2.8 629,877 + -2.4 629,889 + +0.0 629,889 + -1.8 629,889 + -1.8 629,889 + +1.0 629,889 + -1.7 629,889 + -1.9 629,890 - -0.3 629,890 - -0.8 629,890 - +1.0 630,006 + GFF2572 0.10 +2.0 630,006 + GFF2572 0.10 +2.0 630,006 + GFF2572 0.10 +0.0 630,006 + GFF2572 0.10 +0.5 630,007 - GFF2572 0.11 -0.3 630,007 - GFF2572 0.11 +1.0 630,282 + GFF2572 0.70 -0.8 630,282 + GFF2572 0.70 +1.0 630,282 + GFF2572 0.70 +2.0 630,282 + GFF2572 0.70 +0.0 630,282 + GFF2572 0.70 -1.0 630,282 + GFF2572 0.70 +2.0 630,283 - GFF2572 0.70 +0.5 630,283 - GFF2572 0.70 -0.8 630,283 - GFF2572 0.70 -1.3 630,283 - GFF2572 0.70 +1.0 630,283 - GFF2572 0.70 -0.3 630,366 + GFF2572 0.88 -5.0 630,366 + GFF2572 0.88 -3.6 630,366 + GFF2572 0.88 -3.5 630,366 + GFF2572 0.88 -3.7 630,366 + GFF2572 0.88 -2.0 630,366 + GFF2572 0.88 +0.0 630,366 + GFF2572 0.88 -1.0 630,366 + GFF2572 0.88 -3.9 630,366 + GFF2572 0.88 -1.3 630,366 + GFF2572 0.88 -4.5 630,366 + GFF2572 0.88 -2.8 630,366 + GFF2572 0.88 -2.5 630,366 + GFF2572 0.88 -2.5 630,366 + GFF2572 0.88 -1.1 630,366 + GFF2572 0.88 -2.7 630,366 + GFF2572 0.88 -2.6 630,366 + GFF2572 0.88 -5.6 630,366 + GFF2572 0.88 -1.7 630,366 + GFF2572 0.88 -1.8 630,366 + GFF2572 0.88 -2.3 630,366 + GFF2572 0.88 -4.2 630,366 + GFF2572 0.88 +0.0 630,366 + GFF2572 0.88 -0.0 630,366 + GFF2572 0.88 -2.3 630,366 + GFF2572 0.88 -1.0 630,366 + GFF2572 0.88 -2.0 630,366 + GFF2572 0.88 -0.3 630,366 + GFF2572 0.88 -3.4 630,367 - GFF2572 0.88 +1.0 630,367 - GFF2572 0.88 +0.0 630,367 - GFF2572 0.88 -4.7 630,367 - GFF2572 0.88 -2.4 630,367 - GFF2572 0.88 -3.8 630,367 - GFF2572 0.88 -5.4 630,367 - GFF2572 0.88 -4.6 630,367 - GFF2572 0.88 -4.3 630,367 - GFF2572 0.88 -3.7 630,367 - GFF2572 0.88 -3.4 630,367 - GFF2572 0.88 +1.0 630,367 - GFF2572 0.88 -3.4 630,367 - GFF2572 0.88 -4.3 630,367 - GFF2572 0.88 -5.3 630,367 - GFF2572 0.88 -2.6 630,367 - GFF2572 0.88 -1.0 630,367 - GFF2572 0.88 -3.1 630,367 - GFF2572 0.88 -2.8 630,367 - GFF2572 0.88 -3.2 630,367 - GFF2572 0.88 -2.5 630,367 - GFF2572 0.88 -2.3 630,367 - GFF2572 0.88 -1.1 630,367 - GFF2572 0.88 -4.2 630,367 - GFF2572 0.88 -4.3 630,367 - GFF2572 0.88 -4.3 630,367 - GFF2572 0.88 -3.8 630,420 + -2.5 630,420 + -5.6 630,420 + -2.4 630,420 + -4.8 630,420 + -3.2 630,421 - -3.3 630,421 - -1.0 630,421 - -1.1 630,421 - -3.9 630,421 - -1.5 630,421 - -3.6 630,421 - -2.9 630,585 + GFF2573 0.13 +2.0 630,585 + GFF2573 0.13 -1.7 630,585 + GFF2573 0.13 -1.7 630,586 - GFF2573 0.13 -2.2 630,586 - GFF2573 0.13 -1.4 630,975 + GFF2573 0.51 -2.7 630,975 + GFF2573 0.51 +1.0 630,975 + GFF2573 0.51 -1.4 630,975 + GFF2573 0.51 -1.9 630,975 + GFF2573 0.51 +0.0 630,975 + GFF2573 0.51 -3.7 630,976 - GFF2573 0.51 -5.0 630,976 - GFF2573 0.51 -3.5 630,976 - GFF2573 0.51 -3.3 630,976 - GFF2573 0.51 -0.5 630,976 - GFF2573 0.51 -2.3 631,299 + GFF2573 0.82 -1.6 631,299 + GFF2573 0.82 -5.0 631,299 + GFF2573 0.82 -3.8 631,299 + GFF2573 0.82 -2.5 631,299 + GFF2573 0.82 -0.3 631,299 + GFF2573 0.82 -3.1 631,299 + GFF2573 0.82 +0.0 631,299 + GFF2573 0.82 -2.6 631,299 + GFF2573 0.82 -4.8 631,299 + GFF2573 0.82 -2.5 631,300 - GFF2573 0.82 -2.2 631,300 - GFF2573 0.82 -3.5 631,300 - GFF2573 0.82 +0.5 631,300 - GFF2573 0.82 -1.8 631,300 - GFF2573 0.82 -0.8 631,300 - GFF2573 0.82 -2.0 631,300 - GFF2573 0.82 -2.3 631,300 - GFF2573 0.82 -1.5 631,880 + GFF2574 0.42 -0.1 631,880 + GFF2574 0.42 +0.4 631,881 - GFF2574 0.42 -1.5 631,961 + GFF2574 0.52 -1.5 631,961 + GFF2574 0.52 +0.9 631,962 - GFF2574 0.52 -0.6 631,962 - GFF2574 0.52 -1.9 631,962 - GFF2574 0.52 -1.7 632,006 + GFF2574 0.57 +0.8 632,006 + GFF2574 0.57 +0.4 632,006 + GFF2574 0.57 +0.1 632,007 - GFF2574 0.57 -1.7 632,007 - GFF2574 0.57 +1.3 632,007 - GFF2574 0.57 -0.9 632,317 + -3.3 632,317 + -3.2 632,318 - +0.3 632,318 - +2.3 632,318 - -1.1 632,318 - -2.3 632,360 + -0.3 632,360 + -1.7 632,361 - -0.4 632,361 - -1.1 632,428 + -0.5 632,429 - +0.1 632,429 - +1.0 632,429 - -2.0 632,429 - -2.7
Or see this region's nucleotide sequence