Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2488 and GFF2489 are separated by 127 nucleotides GFF2489 and GFF2490 are separated by 7 nucleotides
GFF2488 - Two-component transcriptional response regulator, LuxR family, at 547,053 to 548,093
GFF2488
GFF2489 - hypothetical protein, at 548,221 to 548,880
GFF2489
GFF2490 - Transcriptional regulator, LysR family, at 548,888 to 549,808
GFF2490
Position (kb) 548
549 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 547.377 kb on - strand, within GFF2488 at 547.437 kb on + strand, within GFF2488 at 547.437 kb on + strand, within GFF2488 at 547.437 kb on + strand, within GFF2488 at 547.438 kb on - strand, within GFF2488 at 547.645 kb on - strand, within GFF2488 at 547.645 kb on - strand, within GFF2488 at 547.914 kb on + strand, within GFF2488 at 547.914 kb on + strand, within GFF2488 at 547.915 kb on - strand, within GFF2488 at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.324 kb on - strand, within GFF2489 at 548.324 kb on - strand, within GFF2489 at 548.899 kb on - strand at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.057 kb on + strand, within GFF2490 at 549.058 kb on - strand, within GFF2490 at 549.132 kb on + strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.508 kb on - strand, within GFF2490 at 549.508 kb on - strand, within GFF2490 at 549.508 kb on - strand, within GFF2490 at 549.833 kb on + strand at 549.847 kb on + strand at 549.867 kb on + strand at 549.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 547,377 - GFF2488 0.31 -1.2 547,437 + GFF2488 0.37 +0.8 547,437 + GFF2488 0.37 -2.3 547,437 + GFF2488 0.37 +0.2 547,438 - GFF2488 0.37 -1.8 547,645 - GFF2488 0.57 +2.5 547,645 - GFF2488 0.57 -1.5 547,914 + GFF2488 0.83 -1.9 547,914 + GFF2488 0.83 -2.2 547,915 - GFF2488 0.83 +0.8 548,004 + -1.9 548,004 + +2.9 548,004 + -0.8 548,004 + +0.3 548,004 + +0.7 548,146 + +0.4 548,146 + -1.1 548,146 + -2.7 548,146 + +0.1 548,146 + -1.1 548,147 - +1.9 548,147 - +0.9 548,147 - -0.2 548,147 - +0.3 548,147 - -1.1 548,147 - -0.5 548,323 + GFF2489 0.15 -3.0 548,323 + GFF2489 0.15 +1.8 548,323 + GFF2489 0.15 -1.7 548,323 + GFF2489 0.15 +1.9 548,323 + GFF2489 0.15 +0.0 548,324 - GFF2489 0.16 +2.1 548,324 - GFF2489 0.16 -1.9 548,899 - -0.5 549,012 + GFF2490 0.13 -1.0 549,012 + GFF2490 0.13 -0.9 549,012 + GFF2490 0.13 -3.2 549,012 + GFF2490 0.13 +0.9 549,012 + GFF2490 0.13 +0.1 549,013 - GFF2490 0.14 -1.8 549,013 - GFF2490 0.14 +2.0 549,013 - GFF2490 0.14 +2.0 549,013 - GFF2490 0.14 -1.3 549,057 + GFF2490 0.18 +0.5 549,058 - GFF2490 0.18 -0.1 549,132 + GFF2490 0.26 -2.5 549,133 - GFF2490 0.27 -1.7 549,133 - GFF2490 0.27 +0.8 549,133 - GFF2490 0.27 -0.2 549,133 - GFF2490 0.27 -1.1 549,133 - GFF2490 0.27 -1.4 549,508 - GFF2490 0.67 +1.0 549,508 - GFF2490 0.67 +0.5 549,508 - GFF2490 0.67 +3.1 549,833 + -0.1 549,847 + -0.4 549,867 + +0.8 549,867 + -0.3
Or see this region's nucleotide sequence