Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF244 and GFF245 overlap by 4 nucleotides GFF245 and GFF246 are separated by 131 nucleotides GFF246 and GFF247 are separated by 72 nucleotides
GFF244 - Cys regulon transcriptional activator CysB, at 271,858 to 272,799
GFF244
GFF245 - Aspartate aminotransferase (EC 2.6.1.1), at 272,796 to 273,968
GFF245
GFF246 - Transmembrane protein Msl3831, at 274,100 to 274,258
GFF246
GFF247 - ATP-dependent helicase HrpA, at 274,331 to 278,116
GFF247
Position (kb) 272
273
274 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 271.842 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 272.173 kb on + strand, within GFF244 at 272.173 kb on + strand, within GFF244 at 272.174 kb on - strand, within GFF244 at 272.347 kb on + strand, within GFF244 at 272.348 kb on - strand, within GFF244 at 272.348 kb on - strand, within GFF244 at 272.446 kb on + strand, within GFF244 at 272.446 kb on + strand, within GFF244 at 272.447 kb on - strand, within GFF244 at 272.447 kb on - strand, within GFF244 at 272.447 kb on - strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.555 kb on - strand, within GFF244 at 272.555 kb on - strand, within GFF244 at 272.555 kb on - strand, within GFF244 at 272.662 kb on - strand, within GFF244 at 272.692 kb on + strand, within GFF244 at 272.693 kb on - strand, within GFF244 at 272.788 kb on + strand at 272.788 kb on + strand at 272.788 kb on + strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.795 kb on + strand at 272.795 kb on + strand at 272.795 kb on + strand at 272.795 kb on + strand at 272.795 kb on + strand at 272.795 kb on + strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 272.796 kb on - strand at 273.057 kb on + strand, within GFF245 at 273.057 kb on + strand, within GFF245 at 273.058 kb on - strand, within GFF245 at 273.058 kb on - strand, within GFF245 at 273.058 kb on - strand, within GFF245 at 273.069 kb on + strand, within GFF245 at 273.069 kb on + strand, within GFF245 at 273.070 kb on - strand, within GFF245 at 273.180 kb on + strand, within GFF245 at 273.181 kb on - strand, within GFF245 at 273.181 kb on - strand, within GFF245 at 273.181 kb on - strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.189 kb on + strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.190 kb on - strand, within GFF245 at 273.420 kb on + strand, within GFF245 at 273.420 kb on + strand, within GFF245 at 273.421 kb on - strand, within GFF245 at 273.421 kb on - strand, within GFF245 at 273.519 kb on + strand, within GFF245 at 273.519 kb on + strand, within GFF245 at 273.519 kb on + strand, within GFF245 at 273.519 kb on + strand, within GFF245 at 273.519 kb on + strand, within GFF245 at 273.520 kb on - strand, within GFF245 at 273.520 kb on - strand, within GFF245 at 273.520 kb on - strand, within GFF245 at 273.520 kb on - strand, within GFF245 at 273.520 kb on - strand, within GFF245 at 273.645 kb on + strand, within GFF245 at 273.645 kb on + strand, within GFF245 at 273.645 kb on + strand, within GFF245 at 273.646 kb on - strand, within GFF245 at 273.646 kb on - strand, within GFF245 at 273.646 kb on - strand, within GFF245 at 273.646 kb on - strand, within GFF245 at 273.666 kb on + strand, within GFF245 at 273.687 kb on + strand, within GFF245 at 273.688 kb on - strand, within GFF245 at 273.765 kb on + strand, within GFF245 at 273.765 kb on + strand, within GFF245 at 273.765 kb on + strand, within GFF245 at 273.765 kb on + strand, within GFF245 at 273.766 kb on - strand, within GFF245 at 273.766 kb on - strand, within GFF245 at 273.766 kb on - strand, within GFF245 at 273.766 kb on - strand, within GFF245 at 273.766 kb on - strand, within GFF245 at 273.873 kb on + strand at 273.873 kb on + strand at 273.873 kb on + strand at 273.874 kb on - strand at 273.874 kb on - strand at 273.874 kb on - strand at 273.874 kb on - strand at 274.000 kb on + strand at 274.140 kb on + strand, within GFF246 at 274.140 kb on + strand, within GFF246 at 274.141 kb on - strand, within GFF246 at 274.141 kb on - strand, within GFF246 at 274.147 kb on - strand, within GFF246 at 274.169 kb on + strand, within GFF246 at 274.169 kb on + strand, within GFF246 at 274.170 kb on - strand, within GFF246 at 274.170 kb on - strand, within GFF246 at 274.170 kb on - strand, within GFF246 at 274.171 kb on + strand, within GFF246 at 274.172 kb on - strand, within GFF246 at 274.187 kb on + strand, within GFF246 at 274.187 kb on + strand, within GFF246 at 274.187 kb on + strand, within GFF246 at 274.188 kb on - strand, within GFF246 at 274.188 kb on - strand, within GFF246 at 274.188 kb on - strand, within GFF246 at 274.188 kb on - strand, within GFF246 at 274.188 kb on - strand, within GFF246 at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.254 kb on + strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.255 kb on - strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.257 kb on - strand at 274.497 kb on + strand at 274.498 kb on - strand at 274.735 kb on - strand, within GFF247 at 274.923 kb on + strand, within GFF247 at 274.923 kb on + strand, within GFF247 at 274.923 kb on + strand, within GFF247 at 274.923 kb on + strand, within GFF247 at 274.924 kb on - strand, within GFF247 at 274.924 kb on - strand, within GFF247 at 274.924 kb on - strand, within GFF247 at 274.924 kb on - strand, within GFF247 at 274.924 kb on - strand, within GFF247 at 274.924 kb on - strand, within GFF247
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 271,842 + -1.9 271,938 + -3.3 271,938 + -0.4 271,938 + +0.1 271,938 + -0.4 271,938 + -1.2 271,939 - -1.2 271,939 - -2.2 271,939 - -1.9 271,939 - -3.1 271,939 - -1.6 271,939 - -1.6 271,939 - -0.4 272,173 + GFF244 0.33 -1.9 272,173 + GFF244 0.33 -0.7 272,174 - GFF244 0.34 -1.0 272,347 + GFF244 0.52 -1.2 272,348 - GFF244 0.52 -1.0 272,348 - GFF244 0.52 -1.6 272,446 + GFF244 0.62 -2.1 272,446 + GFF244 0.62 -2.3 272,447 - GFF244 0.63 -3.7 272,447 - GFF244 0.63 -2.0 272,447 - GFF244 0.63 -2.0 272,554 + GFF244 0.74 +0.0 272,554 + GFF244 0.74 -1.2 272,554 + GFF244 0.74 -2.4 272,554 + GFF244 0.74 -0.7 272,554 + GFF244 0.74 -0.7 272,555 - GFF244 0.74 -0.4 272,555 - GFF244 0.74 -1.4 272,555 - GFF244 0.74 -1.4 272,662 - GFF244 0.85 -0.4 272,692 + GFF244 0.89 -1.2 272,693 - GFF244 0.89 -1.0 272,788 + +3.9 272,788 + -3.1 272,788 + +0.2 272,789 - +0.9 272,789 - -1.3 272,789 - +0.3 272,789 - -0.8 272,789 - -1.0 272,789 - +1.1 272,795 + -2.7 272,795 + +0.0 272,795 + -1.4 272,795 + -0.9 272,795 + -0.4 272,795 + -0.0 272,796 - -0.4 272,796 - -1.0 272,796 - +0.6 272,796 - -1.2 272,796 - -0.7 272,796 - -2.2 272,796 - -0.7 272,796 - -1.0 272,796 - -0.4 272,796 - -1.4 272,796 - +0.0 272,796 - -1.2 272,796 - +0.3 272,796 - +1.0 273,057 + GFF245 0.22 +0.4 273,057 + GFF245 0.22 +0.1 273,058 - GFF245 0.22 -1.8 273,058 - GFF245 0.22 -1.2 273,058 - GFF245 0.22 -2.4 273,069 + GFF245 0.23 +1.1 273,069 + GFF245 0.23 +2.3 273,070 - GFF245 0.23 +1.3 273,180 + GFF245 0.33 -0.2 273,181 - GFF245 0.33 -3.5 273,181 - GFF245 0.33 -1.7 273,181 - GFF245 0.33 +2.0 273,189 + GFF245 0.34 +1.2 273,189 + GFF245 0.34 -1.6 273,189 + GFF245 0.34 +0.9 273,189 + GFF245 0.34 +0.0 273,189 + GFF245 0.34 +0.0 273,189 + GFF245 0.34 -1.4 273,189 + GFF245 0.34 -1.1 273,189 + GFF245 0.34 -0.2 273,189 + GFF245 0.34 +0.4 273,189 + GFF245 0.34 +1.1 273,189 + GFF245 0.34 +0.7 273,189 + GFF245 0.34 -0.9 273,190 - GFF245 0.34 +1.6 273,190 - GFF245 0.34 +0.7 273,190 - GFF245 0.34 -1.0 273,190 - GFF245 0.34 -1.8 273,190 - GFF245 0.34 +1.1 273,190 - GFF245 0.34 +1.1 273,190 - GFF245 0.34 +0.3 273,190 - GFF245 0.34 +0.6 273,420 + GFF245 0.53 +0.4 273,420 + GFF245 0.53 -0.7 273,421 - GFF245 0.53 +0.0 273,421 - GFF245 0.53 -0.2 273,519 + GFF245 0.62 -0.9 273,519 + GFF245 0.62 -2.0 273,519 + GFF245 0.62 -1.0 273,519 + GFF245 0.62 +0.8 273,519 + GFF245 0.62 -0.3 273,520 - GFF245 0.62 -0.6 273,520 - GFF245 0.62 -2.6 273,520 - GFF245 0.62 -2.2 273,520 - GFF245 0.62 +1.5 273,520 - GFF245 0.62 +0.6 273,645 + GFF245 0.72 -2.4 273,645 + GFF245 0.72 +0.1 273,645 + GFF245 0.72 -1.9 273,646 - GFF245 0.72 +1.2 273,646 - GFF245 0.72 +2.5 273,646 - GFF245 0.72 -2.1 273,646 - GFF245 0.72 +0.6 273,666 + GFF245 0.74 -1.6 273,687 + GFF245 0.76 -0.3 273,688 - GFF245 0.76 -0.8 273,765 + GFF245 0.83 -2.9 273,765 + GFF245 0.83 +0.7 273,765 + GFF245 0.83 -0.4 273,765 + GFF245 0.83 +2.6 273,766 - GFF245 0.83 +0.1 273,766 - GFF245 0.83 -1.2 273,766 - GFF245 0.83 +1.3 273,766 - GFF245 0.83 +0.7 273,766 - GFF245 0.83 +0.0 273,873 + +0.1 273,873 + +1.7 273,873 + -2.3 273,874 - +0.0 273,874 - -0.8 273,874 - -1.2 273,874 - -2.3 274,000 + +1.0 274,140 + GFF246 0.25 +1.2 274,140 + GFF246 0.25 +1.7 274,141 - GFF246 0.26 -2.7 274,141 - GFF246 0.26 +0.9 274,147 - GFF246 0.30 -2.3 274,169 + GFF246 0.43 -1.4 274,169 + GFF246 0.43 -1.7 274,170 - GFF246 0.44 -1.0 274,170 - GFF246 0.44 +0.3 274,170 - GFF246 0.44 -1.0 274,171 + GFF246 0.45 -0.3 274,172 - GFF246 0.45 -0.7 274,187 + GFF246 0.55 -2.0 274,187 + GFF246 0.55 -2.2 274,187 + GFF246 0.55 +2.1 274,188 - GFF246 0.55 +0.9 274,188 - GFF246 0.55 +1.7 274,188 - GFF246 0.55 -0.3 274,188 - GFF246 0.55 -1.0 274,188 - GFF246 0.55 -2.6 274,254 + -0.6 274,254 + +0.0 274,254 + -2.0 274,254 + -1.2 274,254 + +0.5 274,254 + -0.9 274,254 + -2.5 274,254 + -0.3 274,254 + +1.6 274,254 + +0.3 274,254 + -1.5 274,255 - +1.5 274,255 - +0.8 274,255 - -0.1 274,255 - -0.6 274,255 - +1.0 274,255 - -3.6 274,255 - -2.5 274,255 - -1.1 274,255 - -1.0 274,256 + -0.4 274,256 + -3.0 274,256 + +0.0 274,256 + +0.0 274,256 + +0.1 274,256 + -1.2 274,256 + -1.9 274,256 + +1.3 274,256 + -1.0 274,256 + -0.3 274,256 + -3.0 274,257 - -3.8 274,257 - +0.7 274,257 - -3.0 274,257 - +0.7 274,257 - -0.4 274,257 - -1.6 274,257 - -3.1 274,257 - +0.3 274,257 - -1.1 274,257 - +1.9 274,497 + -2.2 274,498 - -2.6 274,735 - GFF247 0.11 -1.6 274,923 + GFF247 0.16 -0.7 274,923 + GFF247 0.16 -0.7 274,923 + GFF247 0.16 -2.7 274,923 + GFF247 0.16 +1.6 274,924 - GFF247 0.16 +1.0 274,924 - GFF247 0.16 -1.9 274,924 - GFF247 0.16 -0.6 274,924 - GFF247 0.16 +0.3 274,924 - GFF247 0.16 -1.2 274,924 - GFF247 0.16 +0.1
Or see this region's nucleotide sequence