Strain Fitness in Variovorax sp. SCN45 around GFF2442

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2441 and GFF2442 are separated by 10 nucleotidesGFF2442 and GFF2443 are separated by 236 nucleotidesGFF2443 and GFF2444 are separated by 26 nucleotides GFF2441 - RND efflux system, inner membrane transporter, at 492,550 to 495,678 GFF2441 GFF2442 - RND efflux system, membrane fusion protein, at 495,689 to 496,840 GFF2442 GFF2443 - Iron-sulfur cluster regulator IscR, at 497,077 to 497,619 GFF2443 GFF2444 - Integral membrane protein, interacts with FtsH, at 497,646 to 498,341 GFF2444 Position (kb) 495 496 497Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 494.703 kb on - strand, within GFF2441at 494.852 kb on + strand, within GFF2441at 494.853 kb on - strand, within GFF2441at 495.089 kb on + strand, within GFF2441at 495.090 kb on - strand, within GFF2441at 495.090 kb on - strand, within GFF2441at 495.131 kb on + strand, within GFF2441at 495.131 kb on + strand, within GFF2441at 495.132 kb on - strand, within GFF2441at 495.248 kb on + strand, within GFF2441at 495.249 kb on - strand, within GFF2441at 495.249 kb on - strand, within GFF2441at 495.287 kb on + strand, within GFF2441at 495.287 kb on + strand, within GFF2441at 495.288 kb on - strand, within GFF2441at 495.288 kb on - strand, within GFF2441at 495.288 kb on - strand, within GFF2441at 495.416 kb on + strandat 495.447 kb on - strandat 495.447 kb on - strandat 495.447 kb on - strandat 495.530 kb on + strandat 495.530 kb on + strandat 495.530 kb on + strandat 495.572 kb on + strandat 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 496.101 kb on + strand, within GFF2442at 496.218 kb on + strand, within GFF2442at 496.218 kb on + strand, within GFF2442at 496.219 kb on - strand, within GFF2442at 496.219 kb on - strand, within GFF2442at 496.219 kb on - strand, within GFF2442at 496.575 kb on + strand, within GFF2442at 496.576 kb on - strand, within GFF2442at 496.576 kb on - strand, within GFF2442at 496.576 kb on - strand, within GFF2442at 496.897 kb on + strandat 496.898 kb on - strandat 496.898 kb on - strandat 496.898 kb on - strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.397 kb on - strand, within GFF2443at 497.400 kb on + strand, within GFF2443at 497.400 kb on + strand, within GFF2443at 497.400 kb on + strand, within GFF2443at 497.401 kb on - strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.499 kb on - strand, within GFF2443at 497.499 kb on - strand, within GFF2443at 497.499 kb on - strand, within GFF2443at 497.634 kb on + strandat 497.635 kb on - strandat 497.647 kb on + strandat 497.648 kb on - strandat 497.648 kb on - strandat 497.648 kb on - strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
494,703 - GFF2441 0.69 -2.9
494,852 + GFF2441 0.74 -0.5
494,853 - GFF2441 0.74 +0.2
495,089 + GFF2441 0.81 +0.4
495,090 - GFF2441 0.81 -3.2
495,090 - GFF2441 0.81 -0.4
495,131 + GFF2441 0.82 +2.0
495,131 + GFF2441 0.82 +0.0
495,132 - GFF2441 0.83 -3.1
495,248 + GFF2441 0.86 -0.8
495,249 - GFF2441 0.86 -2.1
495,249 - GFF2441 0.86 +0.0
495,287 + GFF2441 0.87 +4.6
495,287 + GFF2441 0.87 +3.9
495,288 - GFF2441 0.88 +0.0
495,288 - GFF2441 0.88 -1.8
495,288 - GFF2441 0.88 -1.0
495,416 + +0.0
495,447 - +0.0
495,447 - -3.1
495,447 - +1.9
495,530 + +0.4
495,530 + +1.0
495,530 + -0.3
495,572 + -2.5
495,987 + GFF2442 0.26 +1.5
495,987 + GFF2442 0.26 -0.8
495,987 + GFF2442 0.26 +1.4
495,987 + GFF2442 0.26 -0.8
495,987 + GFF2442 0.26 -0.3
495,987 + GFF2442 0.26 -0.5
495,988 - GFF2442 0.26 -3.0
495,988 - GFF2442 0.26 +0.0
495,988 - GFF2442 0.26 +1.0
495,988 - GFF2442 0.26 +0.5
496,101 + GFF2442 0.36 +1.0
496,218 + GFF2442 0.46 -0.8
496,218 + GFF2442 0.46 -2.0
496,219 - GFF2442 0.46 -0.3
496,219 - GFF2442 0.46 -0.3
496,219 - GFF2442 0.46 -3.0
496,575 + GFF2442 0.77 +2.0
496,576 - GFF2442 0.77 +1.0
496,576 - GFF2442 0.77 +0.0
496,576 - GFF2442 0.77 +2.0
496,897 + -2.7
496,898 - -2.8
496,898 - +0.3
496,898 - -2.3
497,078 + +0.5
497,078 + +0.5
497,078 + -1.2
497,078 + -0.3
497,078 + -1.0
497,078 + -0.5
497,078 + -0.5
497,079 - -0.9
497,079 - +0.3
497,079 - -0.7
497,079 - -0.1
497,079 - +1.9
497,079 - -1.9
497,397 - GFF2443 0.59 +2.0
497,400 + GFF2443 0.59 -2.2
497,400 + GFF2443 0.59 -1.7
497,400 + GFF2443 0.59 +1.2
497,401 - GFF2443 0.60 -1.4
497,498 + GFF2443 0.78 +1.6
497,498 + GFF2443 0.78 +0.4
497,498 + GFF2443 0.78 -1.5
497,498 + GFF2443 0.78 -0.4
497,498 + GFF2443 0.78 +2.6
497,499 - GFF2443 0.78 -0.9
497,499 - GFF2443 0.78 -2.0
497,499 - GFF2443 0.78 -1.1
497,634 + +0.6
497,635 - -0.3
497,647 + -2.0
497,648 - -0.3
497,648 - -2.6
497,648 - +0.0
497,704 + +1.6
497,704 + +2.0
497,704 + +1.0
497,704 + -0.0
497,704 + -0.8
497,704 + -2.0
497,704 + +0.6
497,704 + -0.0
497,704 + +0.7
497,704 + +0.9
497,705 - -3.5
497,705 - +0.0
497,705 - +0.5
497,705 - +0.9
497,705 - -0.3
497,705 - -1.1
497,705 - -1.8
497,705 - -1.4
497,705 - +0.5
497,705 - -2.5
497,705 - -0.7
497,716 + GFF2444 0.10 -1.3
497,716 + GFF2444 0.10 -1.9
497,716 + GFF2444 0.10 -0.2
497,716 + GFF2444 0.10 +0.7
497,716 + GFF2444 0.10 -0.8
497,716 + GFF2444 0.10 +0.0
497,717 - GFF2444 0.10 -1.1
497,717 - GFF2444 0.10 -1.2
497,717 - GFF2444 0.10 -1.0
497,717 - GFF2444 0.10 -0.8
497,717 - GFF2444 0.10 -3.5
497,717 - GFF2444 0.10 +1.6
497,717 - GFF2444 0.10 +0.0
497,717 - GFF2444 0.10 -0.2
497,717 - GFF2444 0.10 -2.7
497,740 + GFF2444 0.14 -3.8
497,740 + GFF2444 0.14 -2.6
497,740 + GFF2444 0.14 +1.2
497,740 + GFF2444 0.14 -1.0
497,740 + GFF2444 0.14 -2.3
497,740 + GFF2444 0.14 +0.0
497,740 + GFF2444 0.14 -0.8
497,740 + GFF2444 0.14 -2.9
497,740 + GFF2444 0.14 +0.5
497,740 + GFF2444 0.14 +1.0
497,740 + GFF2444 0.14 +0.2
497,740 + GFF2444 0.14 +1.7
497,740 + GFF2444 0.14 +0.0
497,740 + GFF2444 0.14 +0.0
497,740 + GFF2444 0.14 -0.1
497,740 + GFF2444 0.14 -3.6
497,740 + GFF2444 0.14 -2.3
497,740 + GFF2444 0.14 -1.4
497,740 + GFF2444 0.14 +1.2
497,740 + GFF2444 0.14 +2.0
497,740 + GFF2444 0.14 -1.8
497,740 + GFF2444 0.14 -1.1
497,740 + GFF2444 0.14 +0.6
497,740 + GFF2444 0.14 +2.0
497,741 - GFF2444 0.14 -1.1
497,741 - GFF2444 0.14 +0.4
497,741 - GFF2444 0.14 -2.2
497,741 - GFF2444 0.14 -1.5
497,741 - GFF2444 0.14 +0.1
497,741 - GFF2444 0.14 +0.5
497,741 - GFF2444 0.14 +2.0
497,741 - GFF2444 0.14 -0.3
497,741 - GFF2444 0.14 -2.7
497,741 - GFF2444 0.14 +1.0
497,741 - GFF2444 0.14 +0.8
497,741 - GFF2444 0.14 +0.0
497,741 - GFF2444 0.14 +0.2
497,741 - GFF2444 0.14 -0.4
497,741 - GFF2444 0.14 -1.7
497,741 - GFF2444 0.14 +1.1
497,741 - GFF2444 0.14 +0.7
497,741 - GFF2444 0.14 +4.2
497,741 - GFF2444 0.14 -0.8
497,741 - GFF2444 0.14 -1.3
497,741 - GFF2444 0.14 -1.4
497,741 - GFF2444 0.14 -3.2

Or see this region's nucleotide sequence