Strain Fitness in Variovorax sp. SCN45 around GFF244

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF242 and GFF243 overlap by 4 nucleotidesGFF243 and GFF244 are separated by 63 nucleotidesGFF244 and GFF245 overlap by 4 nucleotides GFF242 - Lipopolysaccharide export system permease protein LptG, at 270,299 to 271,411 GFF242 GFF243 - Sirohydrochlorin cobaltochelatase CbiX(small) (EC 4.99.1.3), at 271,408 to 271,794 GFF243 GFF244 - Cys regulon transcriptional activator CysB, at 271,858 to 272,799 GFF244 GFF245 - Aspartate aminotransferase (EC 2.6.1.1), at 272,796 to 273,968 GFF245 Position (kb) 271 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 271.515 kb on - strand, within GFF243at 271.552 kb on + strand, within GFF243at 271.552 kb on + strand, within GFF243at 271.552 kb on + strand, within GFF243at 271.552 kb on + strand, within GFF243at 271.552 kb on + strand, within GFF243at 271.552 kb on + strand, within GFF243at 271.553 kb on - strand, within GFF243at 271.553 kb on - strand, within GFF243at 271.553 kb on - strand, within GFF243at 271.553 kb on - strand, within GFF243at 271.842 kb on + strandat 271.938 kb on + strandat 271.938 kb on + strandat 271.938 kb on + strandat 271.938 kb on + strandat 271.938 kb on + strandat 271.939 kb on - strandat 271.939 kb on - strandat 271.939 kb on - strandat 271.939 kb on - strandat 271.939 kb on - strandat 271.939 kb on - strandat 271.939 kb on - strandat 272.173 kb on + strand, within GFF244at 272.173 kb on + strand, within GFF244at 272.174 kb on - strand, within GFF244at 272.347 kb on + strand, within GFF244at 272.348 kb on - strand, within GFF244at 272.348 kb on - strand, within GFF244at 272.446 kb on + strand, within GFF244at 272.446 kb on + strand, within GFF244at 272.447 kb on - strand, within GFF244at 272.447 kb on - strand, within GFF244at 272.447 kb on - strand, within GFF244at 272.554 kb on + strand, within GFF244at 272.554 kb on + strand, within GFF244at 272.554 kb on + strand, within GFF244at 272.554 kb on + strand, within GFF244at 272.554 kb on + strand, within GFF244at 272.555 kb on - strand, within GFF244at 272.555 kb on - strand, within GFF244at 272.555 kb on - strand, within GFF244at 272.662 kb on - strand, within GFF244at 272.692 kb on + strand, within GFF244at 272.693 kb on - strand, within GFF244at 272.788 kb on + strandat 272.788 kb on + strandat 272.788 kb on + strandat 272.789 kb on - strandat 272.789 kb on - strandat 272.789 kb on - strandat 272.789 kb on - strandat 272.789 kb on - strandat 272.789 kb on - strandat 272.795 kb on + strandat 272.795 kb on + strandat 272.795 kb on + strandat 272.795 kb on + strandat 272.795 kb on + strandat 272.795 kb on + strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 272.796 kb on - strandat 273.057 kb on + strand, within GFF245at 273.057 kb on + strand, within GFF245at 273.058 kb on - strand, within GFF245at 273.058 kb on - strand, within GFF245at 273.058 kb on - strand, within GFF245at 273.069 kb on + strand, within GFF245at 273.069 kb on + strand, within GFF245at 273.070 kb on - strand, within GFF245at 273.180 kb on + strand, within GFF245at 273.181 kb on - strand, within GFF245at 273.181 kb on - strand, within GFF245at 273.181 kb on - strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.420 kb on + strand, within GFF245at 273.420 kb on + strand, within GFF245at 273.421 kb on - strand, within GFF245at 273.421 kb on - strand, within GFF245at 273.519 kb on + strand, within GFF245at 273.519 kb on + strand, within GFF245at 273.519 kb on + strand, within GFF245at 273.519 kb on + strand, within GFF245at 273.519 kb on + strand, within GFF245at 273.520 kb on - strand, within GFF245at 273.520 kb on - strand, within GFF245at 273.520 kb on - strand, within GFF245at 273.520 kb on - strand, within GFF245at 273.520 kb on - strand, within GFF245at 273.645 kb on + strand, within GFF245at 273.645 kb on + strand, within GFF245at 273.645 kb on + strand, within GFF245at 273.646 kb on - strand, within GFF245at 273.646 kb on - strand, within GFF245at 273.646 kb on - strand, within GFF245at 273.646 kb on - strand, within GFF245at 273.666 kb on + strand, within GFF245at 273.687 kb on + strand, within GFF245at 273.688 kb on - strand, within GFF245at 273.765 kb on + strand, within GFF245at 273.765 kb on + strand, within GFF245at 273.765 kb on + strand, within GFF245at 273.765 kb on + strand, within GFF245at 273.766 kb on - strand, within GFF245at 273.766 kb on - strand, within GFF245at 273.766 kb on - strand, within GFF245at 273.766 kb on - strand, within GFF245at 273.766 kb on - strand, within GFF245

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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271,515 - GFF243 0.28 +0.6
271,552 + GFF243 0.37 -1.0
271,552 + GFF243 0.37 -0.9
271,552 + GFF243 0.37 -1.0
271,552 + GFF243 0.37 -2.5
271,552 + GFF243 0.37 -1.7
271,552 + GFF243 0.37 -3.5
271,553 - GFF243 0.37 -2.1
271,553 - GFF243 0.37 -3.1
271,553 - GFF243 0.37 -2.5
271,553 - GFF243 0.37 -3.1
271,842 + -1.9
271,938 + -3.3
271,938 + -0.4
271,938 + +0.1
271,938 + -0.4
271,938 + -1.2
271,939 - -1.2
271,939 - -2.2
271,939 - -1.9
271,939 - -3.1
271,939 - -1.6
271,939 - -1.6
271,939 - -0.4
272,173 + GFF244 0.33 -1.9
272,173 + GFF244 0.33 -0.7
272,174 - GFF244 0.34 -1.0
272,347 + GFF244 0.52 -1.2
272,348 - GFF244 0.52 -1.0
272,348 - GFF244 0.52 -1.6
272,446 + GFF244 0.62 -2.1
272,446 + GFF244 0.62 -2.3
272,447 - GFF244 0.63 -3.7
272,447 - GFF244 0.63 -2.0
272,447 - GFF244 0.63 -2.0
272,554 + GFF244 0.74 +0.0
272,554 + GFF244 0.74 -1.2
272,554 + GFF244 0.74 -2.4
272,554 + GFF244 0.74 -0.7
272,554 + GFF244 0.74 -0.7
272,555 - GFF244 0.74 -0.4
272,555 - GFF244 0.74 -1.4
272,555 - GFF244 0.74 -1.4
272,662 - GFF244 0.85 -0.4
272,692 + GFF244 0.89 -1.2
272,693 - GFF244 0.89 -1.0
272,788 + +3.9
272,788 + -3.1
272,788 + +0.2
272,789 - +0.9
272,789 - -1.3
272,789 - +0.3
272,789 - -0.8
272,789 - -1.0
272,789 - +1.1
272,795 + -2.7
272,795 + +0.0
272,795 + -1.4
272,795 + -0.9
272,795 + -0.4
272,795 + -0.0
272,796 - -0.4
272,796 - -1.0
272,796 - +0.6
272,796 - -1.2
272,796 - -0.7
272,796 - -2.2
272,796 - -0.7
272,796 - -1.0
272,796 - -0.4
272,796 - -1.4
272,796 - +0.0
272,796 - -1.2
272,796 - +0.3
272,796 - +1.0
273,057 + GFF245 0.22 +0.4
273,057 + GFF245 0.22 +0.1
273,058 - GFF245 0.22 -1.8
273,058 - GFF245 0.22 -1.2
273,058 - GFF245 0.22 -2.4
273,069 + GFF245 0.23 +1.1
273,069 + GFF245 0.23 +2.3
273,070 - GFF245 0.23 +1.3
273,180 + GFF245 0.33 -0.2
273,181 - GFF245 0.33 -3.5
273,181 - GFF245 0.33 -1.7
273,181 - GFF245 0.33 +2.0
273,189 + GFF245 0.34 +1.2
273,189 + GFF245 0.34 -1.6
273,189 + GFF245 0.34 +0.9
273,189 + GFF245 0.34 +0.0
273,189 + GFF245 0.34 +0.0
273,189 + GFF245 0.34 -1.4
273,189 + GFF245 0.34 -1.1
273,189 + GFF245 0.34 -0.2
273,189 + GFF245 0.34 +0.4
273,189 + GFF245 0.34 +1.1
273,189 + GFF245 0.34 +0.7
273,189 + GFF245 0.34 -0.9
273,190 - GFF245 0.34 +1.6
273,190 - GFF245 0.34 +0.7
273,190 - GFF245 0.34 -1.0
273,190 - GFF245 0.34 -1.8
273,190 - GFF245 0.34 +1.1
273,190 - GFF245 0.34 +1.1
273,190 - GFF245 0.34 +0.3
273,190 - GFF245 0.34 +0.6
273,420 + GFF245 0.53 +0.4
273,420 + GFF245 0.53 -0.7
273,421 - GFF245 0.53 +0.0
273,421 - GFF245 0.53 -0.2
273,519 + GFF245 0.62 -0.9
273,519 + GFF245 0.62 -2.0
273,519 + GFF245 0.62 -1.0
273,519 + GFF245 0.62 +0.8
273,519 + GFF245 0.62 -0.3
273,520 - GFF245 0.62 -0.6
273,520 - GFF245 0.62 -2.6
273,520 - GFF245 0.62 -2.2
273,520 - GFF245 0.62 +1.5
273,520 - GFF245 0.62 +0.6
273,645 + GFF245 0.72 -2.4
273,645 + GFF245 0.72 +0.1
273,645 + GFF245 0.72 -1.9
273,646 - GFF245 0.72 +1.2
273,646 - GFF245 0.72 +2.5
273,646 - GFF245 0.72 -2.1
273,646 - GFF245 0.72 +0.6
273,666 + GFF245 0.74 -1.6
273,687 + GFF245 0.76 -0.3
273,688 - GFF245 0.76 -0.8
273,765 + GFF245 0.83 -2.9
273,765 + GFF245 0.83 +0.7
273,765 + GFF245 0.83 -0.4
273,765 + GFF245 0.83 +2.6
273,766 - GFF245 0.83 +0.1
273,766 - GFF245 0.83 -1.2
273,766 - GFF245 0.83 +1.3
273,766 - GFF245 0.83 +0.7
273,766 - GFF245 0.83 +0.0

Or see this region's nucleotide sequence