Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2400 and GFF2401 overlap by 4 nucleotides GFF2401 and GFF2402 are separated by 129 nucleotides GFF2402 and GFF2403 are separated by 54 nucleotides GFF2403 and GFF2404 are separated by 121 nucleotides
GFF2400 - no description, at 453,543 to 454,592
GFF2400
GFF2401 - hypothetical protein, at 454,589 to 455,161
GFF2401
GFF2402 - hypothetical protein, at 455,291 to 455,752
GFF2402
GFF2403 - CHAP domain containing protein, at 455,807 to 456,418
GFF2403
GFF2404 - Hypothetical protein with Rieske (2Fe-2S) region, at 456,540 to 457,622
GFF2404
Position (kb) 455
456 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 455.022 kb on + strand, within GFF2401 at 455.023 kb on - strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.058 kb on - strand, within GFF2401 at 455.058 kb on - strand, within GFF2401 at 455.278 kb on + strand at 455.341 kb on - strand, within GFF2402 at 455.366 kb on + strand, within GFF2402 at 455.367 kb on - strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.564 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.572 kb on - strand, within GFF2402 at 455.572 kb on - strand, within GFF2402 at 455.572 kb on - strand, within GFF2402 at 455.667 kb on + strand, within GFF2402 at 455.835 kb on + strand at 455.836 kb on - strand at 455.966 kb on + strand, within GFF2403 at 455.966 kb on + strand, within GFF2403 at 455.966 kb on + strand, within GFF2403 at 455.967 kb on - strand, within GFF2403 at 456.017 kb on + strand, within GFF2403 at 456.017 kb on + strand, within GFF2403 at 456.035 kb on + strand, within GFF2403 at 456.035 kb on + strand, within GFF2403 at 456.036 kb on - strand, within GFF2403 at 456.036 kb on - strand, within GFF2403 at 456.062 kb on + strand, within GFF2403 at 456.065 kb on + strand, within GFF2403 at 456.065 kb on + strand, within GFF2403 at 456.119 kb on + strand, within GFF2403 at 456.120 kb on - strand, within GFF2403 at 456.120 kb on - strand, within GFF2403 at 456.401 kb on - strand at 456.445 kb on + strand at 456.539 kb on + strand at 456.744 kb on + strand, within GFF2404 at 456.745 kb on - strand, within GFF2404 at 456.745 kb on - strand, within GFF2404
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 455,022 + GFF2401 0.76 +0.1 455,023 - GFF2401 0.76 +0.2 455,034 + GFF2401 0.78 -2.4 455,034 + GFF2401 0.78 -0.8 455,034 + GFF2401 0.78 -1.0 455,035 - GFF2401 0.78 +0.7 455,035 - GFF2401 0.78 -3.1 455,035 - GFF2401 0.78 -0.1 455,058 - GFF2401 0.82 -0.6 455,058 - GFF2401 0.82 -1.9 455,278 + +0.3 455,341 - GFF2402 0.11 -1.0 455,366 + GFF2402 0.16 -1.3 455,367 - GFF2402 0.16 +0.2 455,534 + GFF2402 0.53 +1.7 455,534 + GFF2402 0.53 -3.1 455,534 + GFF2402 0.53 -1.4 455,534 + GFF2402 0.53 -1.0 455,534 + GFF2402 0.53 +0.2 455,535 - GFF2402 0.53 +0.3 455,535 - GFF2402 0.53 +0.1 455,535 - GFF2402 0.53 +0.4 455,535 - GFF2402 0.53 +0.3 455,535 - GFF2402 0.53 -2.9 455,535 - GFF2402 0.53 -0.7 455,535 - GFF2402 0.53 +2.0 455,564 + GFF2402 0.59 -1.7 455,571 + GFF2402 0.61 -2.3 455,571 + GFF2402 0.61 -2.4 455,571 + GFF2402 0.61 -2.6 455,572 - GFF2402 0.61 -1.4 455,572 - GFF2402 0.61 -1.3 455,572 - GFF2402 0.61 -2.3 455,667 + GFF2402 0.81 +1.0 455,835 + +1.0 455,836 - -1.6 455,966 + GFF2403 0.26 +2.0 455,966 + GFF2403 0.26 +1.7 455,966 + GFF2403 0.26 -3.1 455,967 - GFF2403 0.26 +0.8 456,017 + GFF2403 0.34 +1.0 456,017 + GFF2403 0.34 -2.6 456,035 + GFF2403 0.37 +0.8 456,035 + GFF2403 0.37 +0.3 456,036 - GFF2403 0.37 +0.7 456,036 - GFF2403 0.37 -1.0 456,062 + GFF2403 0.42 +0.9 456,065 + GFF2403 0.42 -4.0 456,065 + GFF2403 0.42 -1.9 456,119 + GFF2403 0.51 -2.6 456,120 - GFF2403 0.51 +0.8 456,120 - GFF2403 0.51 +0.6 456,401 - -0.6 456,445 + -2.5 456,539 + -2.5 456,744 + GFF2404 0.19 -0.7 456,745 - GFF2404 0.19 -3.1 456,745 - GFF2404 0.19 -2.6
Or see this region's nucleotide sequence