Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2399 and GFF2400 are separated by 73 nucleotides GFF2400 and GFF2401 overlap by 4 nucleotides GFF2401 and GFF2402 are separated by 129 nucleotides
GFF2399 - TonB-dependent receptor, at 450,935 to 453,469
GFF2399
GFF2400 - no description, at 453,543 to 454,592
GFF2400
GFF2401 - hypothetical protein, at 454,589 to 455,161
GFF2401
GFF2402 - hypothetical protein, at 455,291 to 455,752
GFF2402
Position (kb) 453
454
455 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.796 kb on + strand, within GFF2399 at 452.796 kb on + strand, within GFF2399 at 452.797 kb on - strand, within GFF2399 at 452.910 kb on + strand, within GFF2399 at 452.910 kb on + strand, within GFF2399 at 452.911 kb on - strand, within GFF2399 at 453.220 kb on - strand at 453.220 kb on - strand at 453.220 kb on - strand at 453.250 kb on - strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.540 kb on - strand at 453.540 kb on - strand at 453.540 kb on - strand at 453.540 kb on - strand at 453.544 kb on + strand at 453.544 kb on + strand at 453.545 kb on - strand at 453.545 kb on - strand at 453.704 kb on - strand, within GFF2400 at 454.195 kb on + strand, within GFF2400 at 454.195 kb on + strand, within GFF2400 at 454.195 kb on + strand, within GFF2400 at 454.196 kb on - strand, within GFF2400 at 454.223 kb on - strand, within GFF2400 at 455.022 kb on + strand, within GFF2401 at 455.023 kb on - strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.058 kb on - strand, within GFF2401 at 455.058 kb on - strand, within GFF2401 at 455.278 kb on + strand at 455.341 kb on - strand, within GFF2402 at 455.366 kb on + strand, within GFF2402 at 455.367 kb on - strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.564 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.572 kb on - strand, within GFF2402 at 455.572 kb on - strand, within GFF2402 at 455.572 kb on - strand, within GFF2402
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 452,641 - GFF2399 0.67 +0.8 452,641 - GFF2399 0.67 +3.0 452,641 - GFF2399 0.67 -0.5 452,641 - GFF2399 0.67 +1.5 452,641 - GFF2399 0.67 -1.0 452,641 - GFF2399 0.67 -0.3 452,796 + GFF2399 0.73 -2.7 452,796 + GFF2399 0.73 -0.5 452,797 - GFF2399 0.73 +0.1 452,910 + GFF2399 0.78 -0.7 452,910 + GFF2399 0.78 -1.9 452,911 - GFF2399 0.78 +0.4 453,220 - +1.8 453,220 - -4.0 453,220 - -2.6 453,250 - +1.3 453,539 + +0.1 453,539 + -3.9 453,539 + +1.0 453,539 + -0.6 453,539 + -2.4 453,539 + -0.8 453,540 - +0.8 453,540 - +1.3 453,540 - +0.0 453,540 - -1.0 453,544 + +1.8 453,544 + -2.2 453,545 - -1.4 453,545 - +0.4 453,704 - GFF2400 0.15 -4.5 454,195 + GFF2400 0.62 -2.2 454,195 + GFF2400 0.62 -1.9 454,195 + GFF2400 0.62 -1.8 454,196 - GFF2400 0.62 -1.1 454,223 - GFF2400 0.65 -2.6 455,022 + GFF2401 0.76 +0.1 455,023 - GFF2401 0.76 +0.2 455,034 + GFF2401 0.78 -2.4 455,034 + GFF2401 0.78 -0.8 455,034 + GFF2401 0.78 -1.0 455,035 - GFF2401 0.78 +0.7 455,035 - GFF2401 0.78 -3.1 455,035 - GFF2401 0.78 -0.1 455,058 - GFF2401 0.82 -0.6 455,058 - GFF2401 0.82 -1.9 455,278 + +0.3 455,341 - GFF2402 0.11 -1.0 455,366 + GFF2402 0.16 -1.3 455,367 - GFF2402 0.16 +0.2 455,534 + GFF2402 0.53 +1.7 455,534 + GFF2402 0.53 -3.1 455,534 + GFF2402 0.53 -1.4 455,534 + GFF2402 0.53 -1.0 455,534 + GFF2402 0.53 +0.2 455,535 - GFF2402 0.53 +0.3 455,535 - GFF2402 0.53 +0.1 455,535 - GFF2402 0.53 +0.4 455,535 - GFF2402 0.53 +0.3 455,535 - GFF2402 0.53 -2.9 455,535 - GFF2402 0.53 -0.7 455,535 - GFF2402 0.53 +2.0 455,564 + GFF2402 0.59 -1.7 455,571 + GFF2402 0.61 -2.3 455,571 + GFF2402 0.61 -2.4 455,571 + GFF2402 0.61 -2.6 455,572 - GFF2402 0.61 -1.4 455,572 - GFF2402 0.61 -1.3 455,572 - GFF2402 0.61 -2.3
Or see this region's nucleotide sequence