Strain Fitness in Variovorax sp. SCN45 around GFF2382

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2380 and GFF2381 are separated by 43 nucleotidesGFF2381 and GFF2382 are separated by 59 nucleotidesGFF2382 and GFF2383 overlap by 1 nucleotides GFF2380 - Protein phosphatase 2C-like, at 434,557 to 435,465 GFF2380 GFF2381 - Ribonuclease PH (EC 2.7.7.56), at 435,509 to 436,243 GFF2381 GFF2382 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66), at 436,303 to 436,908 GFF2382 GFF2383 - Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW, at 436,908 to 438,170 GFF2383 Position (kb) 436 437Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 435.707 kb on + strand, within GFF2381at 436.049 kb on + strand, within GFF2381at 436.050 kb on - strand, within GFF2381at 436.050 kb on - strand, within GFF2381at 436.254 kb on + strandat 436.254 kb on + strandat 436.255 kb on - strandat 436.255 kb on - strandat 436.255 kb on - strandat 436.255 kb on - strandat 436.255 kb on - strandat 436.255 kb on - strandat 436.302 kb on + strandat 436.303 kb on - strandat 436.303 kb on - strandat 436.455 kb on + strand, within GFF2382at 436.558 kb on + strand, within GFF2382at 436.559 kb on - strand, within GFF2382at 436.562 kb on - strand, within GFF2382at 436.562 kb on - strand, within GFF2382at 436.562 kb on - strand, within GFF2382at 436.562 kb on - strand, within GFF2382at 436.562 kb on - strand, within GFF2382at 436.783 kb on + strand, within GFF2382at 436.783 kb on + strand, within GFF2382at 436.783 kb on + strand, within GFF2382at 436.783 kb on + strand, within GFF2382at 436.783 kb on + strand, within GFF2382at 436.784 kb on - strand, within GFF2382at 437.028 kb on + strandat 437.028 kb on + strandat 437.029 kb on - strandat 437.029 kb on - strandat 437.029 kb on - strandat 437.029 kb on - strandat 437.029 kb on - strandat 437.029 kb on - strandat 437.065 kb on - strand, within GFF2383at 437.136 kb on + strand, within GFF2383at 437.136 kb on + strand, within GFF2383at 437.136 kb on + strand, within GFF2383at 437.136 kb on + strand, within GFF2383at 437.137 kb on - strand, within GFF2383at 437.137 kb on - strand, within GFF2383at 437.137 kb on - strand, within GFF2383at 437.192 kb on + strand, within GFF2383at 437.358 kb on + strand, within GFF2383at 437.514 kb on + strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.670 kb on + strand, within GFF2383at 437.739 kb on + strand, within GFF2383at 437.779 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.806 kb on + strand, within GFF2383at 437.807 kb on - strand, within GFF2383at 437.883 kb on + strand, within GFF2383at 437.883 kb on + strand, within GFF2383at 437.883 kb on + strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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435,707 + GFF2381 0.27 -3.5
436,049 + GFF2381 0.73 -2.9
436,050 - GFF2381 0.74 -1.8
436,050 - GFF2381 0.74 -2.0
436,254 + -1.5
436,254 + +0.0
436,255 - +2.0
436,255 - -0.0
436,255 - -3.0
436,255 - -0.2
436,255 - +0.5
436,255 - +1.5
436,302 + -0.6
436,303 - +0.0
436,303 - +0.4
436,455 + GFF2382 0.25 -1.9
436,558 + GFF2382 0.42 +1.3
436,559 - GFF2382 0.42 -0.1
436,562 - GFF2382 0.43 +0.6
436,562 - GFF2382 0.43 +0.7
436,562 - GFF2382 0.43 -1.7
436,562 - GFF2382 0.43 -2.0
436,562 - GFF2382 0.43 +0.0
436,783 + GFF2382 0.79 -1.0
436,783 + GFF2382 0.79 -1.4
436,783 + GFF2382 0.79 -2.0
436,783 + GFF2382 0.79 -2.4
436,783 + GFF2382 0.79 -0.5
436,784 - GFF2382 0.79 -1.0
437,028 + -3.3
437,028 + -3.1
437,029 - -3.6
437,029 - -1.2
437,029 - +0.5
437,029 - -1.3
437,029 - +0.5
437,029 - -0.3
437,065 - GFF2383 0.12 -1.5
437,136 + GFF2383 0.18 -1.5
437,136 + GFF2383 0.18 +0.4
437,136 + GFF2383 0.18 -1.5
437,136 + GFF2383 0.18 -1.4
437,137 - GFF2383 0.18 -2.6
437,137 - GFF2383 0.18 -1.7
437,137 - GFF2383 0.18 -1.6
437,192 + GFF2383 0.22 -1.6
437,358 + GFF2383 0.36 +1.7
437,514 + GFF2383 0.48 -1.0
437,515 - GFF2383 0.48 +2.2
437,515 - GFF2383 0.48 +0.0
437,515 - GFF2383 0.48 +1.6
437,515 - GFF2383 0.48 -0.5
437,515 - GFF2383 0.48 -1.8
437,515 - GFF2383 0.48 -2.1
437,515 - GFF2383 0.48 -1.8
437,515 - GFF2383 0.48 +2.8
437,515 - GFF2383 0.48 -2.5
437,598 + GFF2383 0.55 -1.0
437,598 + GFF2383 0.55 -2.5
437,598 + GFF2383 0.55 -0.3
437,598 + GFF2383 0.55 -0.7
437,670 + GFF2383 0.60 +1.5
437,739 + GFF2383 0.66 -2.7
437,779 - GFF2383 0.69 -0.3
437,797 - GFF2383 0.70 -0.8
437,797 - GFF2383 0.70 -1.6
437,797 - GFF2383 0.70 -1.3
437,797 - GFF2383 0.70 -1.8
437,806 + GFF2383 0.71 +2.0
437,807 - GFF2383 0.71 -2.3
437,883 + GFF2383 0.77 -2.7
437,883 + GFF2383 0.77 -2.1
437,883 + GFF2383 0.77 -0.2
437,884 - GFF2383 0.77 +0.8
437,884 - GFF2383 0.77 -1.1
437,884 - GFF2383 0.77 +0.8
437,884 - GFF2383 0.77 -1.0
437,884 - GFF2383 0.77 +1.7
437,884 - GFF2383 0.77 -2.0

Or see this region's nucleotide sequence