Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2370 and GFF2371 are separated by 14 nucleotides GFF2371 and GFF2372 are separated by 64 nucleotides
GFF2370 - L-carnitine dehydratase/bile acid-inducible protein F, at 424,217 to 425,422
GFF2370
GFF2371 - BUG/TctC family periplasmic protein, at 425,437 to 426,432
GFF2371
GFF2372 - Similar to citrate lyase beta chain, 3, at 426,497 to 427,366
GFF2372
Position (kb) 425
426
427 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 424.638 kb on + strand, within GFF2370 at 424.638 kb on + strand, within GFF2370 at 424.638 kb on + strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.812 kb on + strand, within GFF2370 at 424.854 kb on + strand, within GFF2370 at 424.876 kb on - strand, within GFF2370 at 424.987 kb on - strand, within GFF2370 at 424.987 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.220 kb on + strand, within GFF2370 at 425.220 kb on + strand, within GFF2370 at 425.221 kb on - strand, within GFF2370 at 425.298 kb on + strand, within GFF2370 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.856 kb on - strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.951 kb on + strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 426.146 kb on + strand, within GFF2371 at 426.147 kb on - strand, within GFF2371 at 426.169 kb on + strand, within GFF2371 at 426.462 kb on + strand at 426.462 kb on + strand at 426.462 kb on + strand at 426.462 kb on + strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.591 kb on + strand, within GFF2372 at 426.592 kb on - strand, within GFF2372 at 426.804 kb on + strand, within GFF2372 at 426.810 kb on + strand, within GFF2372 at 426.811 kb on - strand, within GFF2372 at 427.291 kb on + strand at 427.292 kb on - strand at 427.292 kb on - strand at 427.292 kb on - strand at 427.292 kb on - strand at 427.413 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 424,638 + GFF2370 0.35 -0.8 424,638 + GFF2370 0.35 -1.8 424,638 + GFF2370 0.35 -1.9 424,639 - GFF2370 0.35 -2.7 424,639 - GFF2370 0.35 -1.8 424,639 - GFF2370 0.35 -1.1 424,639 - GFF2370 0.35 -0.9 424,639 - GFF2370 0.35 +2.4 424,639 - GFF2370 0.35 -1.9 424,639 - GFF2370 0.35 -4.8 424,639 - GFF2370 0.35 -4.2 424,783 - GFF2370 0.47 +0.5 424,783 - GFF2370 0.47 -1.9 424,783 - GFF2370 0.47 -1.1 424,812 + GFF2370 0.49 -0.5 424,854 + GFF2370 0.53 -2.1 424,876 - GFF2370 0.55 -0.0 424,987 - GFF2370 0.64 -3.5 424,987 - GFF2370 0.64 -1.3 425,005 - GFF2370 0.65 +0.4 425,005 - GFF2370 0.65 -3.4 425,005 - GFF2370 0.65 -1.4 425,005 - GFF2370 0.65 -1.0 425,220 + GFF2370 0.83 -1.8 425,220 + GFF2370 0.83 -2.1 425,221 - GFF2370 0.83 -2.8 425,298 + GFF2370 0.90 -2.5 425,855 + GFF2371 0.42 -0.0 425,855 + GFF2371 0.42 +0.3 425,855 + GFF2371 0.42 -1.8 425,855 + GFF2371 0.42 -0.4 425,856 - GFF2371 0.42 -0.8 425,945 + GFF2371 0.51 -1.0 425,945 + GFF2371 0.51 -1.0 425,945 + GFF2371 0.51 -0.3 425,945 + GFF2371 0.51 +3.7 425,945 + GFF2371 0.51 -0.7 425,945 + GFF2371 0.51 +0.6 425,945 + GFF2371 0.51 -2.3 425,946 - GFF2371 0.51 -2.2 425,946 - GFF2371 0.51 -0.3 425,946 - GFF2371 0.51 -2.3 425,951 + GFF2371 0.52 +0.5 425,952 - GFF2371 0.52 +1.0 425,952 - GFF2371 0.52 -0.8 425,952 - GFF2371 0.52 +0.3 426,146 + GFF2371 0.71 -1.5 426,147 - GFF2371 0.71 -1.7 426,169 + GFF2371 0.73 -0.4 426,462 + +1.0 426,462 + -2.7 426,462 + +1.0 426,462 + +1.0 426,463 - +0.0 426,463 - +0.2 426,463 - +0.6 426,463 - -0.0 426,463 - -1.5 426,463 - +0.0 426,463 - +0.9 426,463 - +0.8 426,463 - +0.5 426,463 - +0.3 426,591 + GFF2372 0.11 -1.0 426,592 - GFF2372 0.11 -0.5 426,804 + GFF2372 0.35 -0.1 426,810 + GFF2372 0.36 +1.0 426,811 - GFF2372 0.36 -1.7 427,291 + -0.5 427,292 - -0.3 427,292 - -3.6 427,292 - +0.7 427,292 - -0.5 427,413 + -0.7
Or see this region's nucleotide sequence