Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2366 and GFF2367 are separated by 130 nucleotides GFF2367 and GFF2368 are separated by 15 nucleotides
GFF2366 - Tricarboxylate transport protein TctC, at 420,269 to 421,267
GFF2366
GFF2367 - Transcriptional regulator, LysR family, at 421,398 to 422,333
GFF2367
GFF2368 - ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate), at 422,349 to 423,314
GFF2368
Position (kb) 421
422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 420.542 kb on - strand, within GFF2366 at 420.697 kb on - strand, within GFF2366 at 420.697 kb on - strand, within GFF2366 at 420.784 kb on - strand, within GFF2366 at 420.784 kb on - strand, within GFF2366 at 420.897 kb on + strand, within GFF2366 at 420.965 kb on + strand, within GFF2366 at 420.965 kb on + strand, within GFF2366 at 420.966 kb on - strand, within GFF2366 at 420.966 kb on - strand, within GFF2366 at 420.981 kb on + strand, within GFF2366 at 420.981 kb on + strand, within GFF2366 at 421.164 kb on + strand, within GFF2366 at 421.362 kb on + strand at 421.608 kb on + strand, within GFF2367 at 422.206 kb on + strand, within GFF2367 at 422.206 kb on + strand, within GFF2367 at 422.207 kb on - strand, within GFF2367 at 422.207 kb on - strand, within GFF2367 at 422.397 kb on + strand at 422.397 kb on + strand at 422.397 kb on + strand at 422.398 kb on - strand at 422.518 kb on - strand, within GFF2368 at 422.686 kb on + strand, within GFF2368 at 422.686 kb on + strand, within GFF2368 at 422.770 kb on + strand, within GFF2368 at 422.771 kb on - strand, within GFF2368 at 422.771 kb on - strand, within GFF2368 at 422.915 kb on - strand, within GFF2368 at 423.043 kb on + strand, within GFF2368 at 423.055 kb on + strand, within GFF2368 at 423.056 kb on - strand, within GFF2368 at 423.205 kb on + strand, within GFF2368
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 420,542 - GFF2366 0.27 -0.4 420,697 - GFF2366 0.43 +1.4 420,697 - GFF2366 0.43 +0.0 420,784 - GFF2366 0.52 -2.0 420,784 - GFF2366 0.52 +0.6 420,897 + GFF2366 0.63 +0.6 420,965 + GFF2366 0.70 +0.4 420,965 + GFF2366 0.70 +0.5 420,966 - GFF2366 0.70 -1.5 420,966 - GFF2366 0.70 -0.3 420,981 + GFF2366 0.71 -2.7 420,981 + GFF2366 0.71 -0.3 421,164 + GFF2366 0.90 -2.0 421,362 + -0.1 421,608 + GFF2367 0.22 -3.2 422,206 + GFF2367 0.86 -2.4 422,206 + GFF2367 0.86 +0.0 422,207 - GFF2367 0.86 -2.1 422,207 - GFF2367 0.86 -2.9 422,397 + +1.5 422,397 + +1.9 422,397 + +1.0 422,398 - +0.0 422,518 - GFF2368 0.17 +0.7 422,686 + GFF2368 0.35 -3.1 422,686 + GFF2368 0.35 +2.3 422,770 + GFF2368 0.44 -1.7 422,771 - GFF2368 0.44 -2.5 422,771 - GFF2368 0.44 -1.3 422,915 - GFF2368 0.59 +2.0 423,043 + GFF2368 0.72 +0.7 423,055 + GFF2368 0.73 -2.8 423,056 - GFF2368 0.73 +0.0 423,205 + GFF2368 0.89 -1.1
Or see this region's nucleotide sequence