Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2323 and GFF2324 are separated by 23 nucleotides GFF2324 and GFF2325 are separated by 31 nucleotides GFF2325 and GFF2326 are separated by 285 nucleotides
GFF2323 - Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 374,058 to 375,056
GFF2323
GFF2324 - Lactam utilization protein LamB, at 375,080 to 375,814
GFF2324
GFF2325 - Methyl-accepting chemotaxis sensor/transducer protein, at 375,846 to 377,537
GFF2325
GFF2326 - Transcriptional regulator, LysR family, at 377,823 to 378,725
GFF2326
Position (kb) 375
376
377
378 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 375.000 kb on + strand at 375.001 kb on - strand at 375.001 kb on - strand at 375.001 kb on - strand at 375.054 kb on + strand at 375.054 kb on + strand at 375.054 kb on + strand at 375.055 kb on - strand at 375.055 kb on - strand at 375.055 kb on - strand at 375.055 kb on - strand at 375.055 kb on - strand at 375.329 kb on + strand, within GFF2324 at 375.329 kb on + strand, within GFF2324 at 375.330 kb on - strand, within GFF2324 at 375.330 kb on - strand, within GFF2324 at 375.330 kb on - strand, within GFF2324 at 375.407 kb on + strand, within GFF2324 at 375.407 kb on + strand, within GFF2324 at 375.407 kb on + strand, within GFF2324 at 375.407 kb on + strand, within GFF2324 at 375.408 kb on - strand, within GFF2324 at 375.408 kb on - strand, within GFF2324 at 375.408 kb on - strand, within GFF2324 at 375.408 kb on - strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.572 kb on + strand, within GFF2324 at 375.573 kb on - strand, within GFF2324 at 375.573 kb on - strand, within GFF2324 at 375.573 kb on - strand, within GFF2324 at 376.310 kb on - strand, within GFF2325 at 377.068 kb on + strand, within GFF2325 at 377.170 kb on + strand, within GFF2325 at 377.242 kb on - strand, within GFF2325 at 377.242 kb on - strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.365 kb on + strand, within GFF2325 at 377.437 kb on + strand at 377.437 kb on + strand at 377.437 kb on + strand at 377.438 kb on - strand at 377.438 kb on - strand at 377.540 kb on + strand at 377.540 kb on + strand at 377.541 kb on - strand at 377.602 kb on + strand at 377.603 kb on - strand at 377.603 kb on - strand at 377.622 kb on - strand at 377.649 kb on - strand at 377.666 kb on + strand at 377.666 kb on + strand at 377.667 kb on - strand at 377.673 kb on + strand at 377.677 kb on + strand at 377.678 kb on - strand at 377.773 kb on + strand at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.331 kb on - strand, within GFF2326
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 375,000 + -2.6 375,001 - -0.9 375,001 - -2.1 375,001 - +0.0 375,054 + -1.4 375,054 + -0.1 375,054 + -1.3 375,055 - +0.7 375,055 - -1.3 375,055 - -0.2 375,055 - -0.3 375,055 - -1.0 375,329 + GFF2324 0.34 +1.2 375,329 + GFF2324 0.34 -0.6 375,330 - GFF2324 0.34 +1.6 375,330 - GFF2324 0.34 -1.1 375,330 - GFF2324 0.34 +1.2 375,407 + GFF2324 0.44 -2.4 375,407 + GFF2324 0.44 +0.9 375,407 + GFF2324 0.44 -0.9 375,407 + GFF2324 0.44 +0.4 375,408 - GFF2324 0.45 +1.5 375,408 - GFF2324 0.45 -0.3 375,408 - GFF2324 0.45 -0.1 375,408 - GFF2324 0.45 -2.5 375,572 + GFF2324 0.67 -1.9 375,572 + GFF2324 0.67 -1.3 375,572 + GFF2324 0.67 -1.6 375,572 + GFF2324 0.67 +1.5 375,572 + GFF2324 0.67 -2.3 375,572 + GFF2324 0.67 -0.1 375,572 + GFF2324 0.67 -0.6 375,573 - GFF2324 0.67 +1.5 375,573 - GFF2324 0.67 -0.8 375,573 - GFF2324 0.67 -1.0 376,310 - GFF2325 0.27 +2.2 377,068 + GFF2325 0.72 -4.2 377,170 + GFF2325 0.78 -2.4 377,242 - GFF2325 0.83 -0.5 377,242 - GFF2325 0.83 +0.4 377,342 + GFF2325 0.88 -1.3 377,342 + GFF2325 0.88 -1.6 377,342 + GFF2325 0.88 -0.5 377,342 + GFF2325 0.88 -2.7 377,343 - GFF2325 0.88 -0.2 377,343 - GFF2325 0.88 +2.6 377,343 - GFF2325 0.88 +0.4 377,343 - GFF2325 0.88 -1.6 377,365 + GFF2325 0.90 -1.4 377,437 + +2.5 377,437 + -1.0 377,437 + -0.3 377,438 - +0.6 377,438 - +0.1 377,540 + -2.9 377,540 + +0.2 377,541 - -1.6 377,602 + -1.9 377,603 - -3.5 377,603 - +0.7 377,622 - +0.6 377,649 - -0.7 377,666 + -2.0 377,666 + +0.3 377,667 - -3.8 377,673 + -2.9 377,677 + +0.7 377,678 - -2.8 377,773 + +1.0 378,330 + GFF2326 0.56 +0.1 378,330 + GFF2326 0.56 +0.5 378,330 + GFF2326 0.56 +0.8 378,330 + GFF2326 0.56 +1.2 378,331 - GFF2326 0.56 -1.5
Or see this region's nucleotide sequence