Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2280 and GFF2281 are separated by 56 nucleotides GFF2281 and GFF2282 are separated by 22 nucleotides
GFF2280 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 334,785 to 335,921
GFF2280
GFF2281 - Short-chain dehydrogenase/reductase SDR, at 335,978 to 336,754
GFF2281
GFF2282 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 336,777 to 338,630
GFF2282
Position (kb) 335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 335.051 kb on - strand, within GFF2280 at 335.051 kb on - strand, within GFF2280 at 335.216 kb on - strand, within GFF2280 at 335.216 kb on - strand, within GFF2280 at 335.231 kb on - strand, within GFF2280 at 335.231 kb on - strand, within GFF2280 at 335.444 kb on + strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.447 kb on - strand, within GFF2280 at 335.447 kb on - strand, within GFF2280 at 335.504 kb on - strand, within GFF2280 at 335.935 kb on + strand at 335.936 kb on - strand at 335.936 kb on - strand at 335.936 kb on - strand at 336.402 kb on + strand, within GFF2281 at 336.402 kb on + strand, within GFF2281 at 336.403 kb on - strand, within GFF2281 at 337.135 kb on + strand, within GFF2282 at 337.176 kb on + strand, within GFF2282 at 337.176 kb on + strand, within GFF2282 at 337.176 kb on + strand, within GFF2282 at 337.176 kb on + strand, within GFF2282 at 337.176 kb on + strand, within GFF2282 at 337.177 kb on - strand, within GFF2282 at 337.468 kb on + strand, within GFF2282 at 337.594 kb on + strand, within GFF2282 at 337.595 kb on - strand, within GFF2282 at 337.693 kb on + strand, within GFF2282 at 337.693 kb on + strand, within GFF2282 at 337.693 kb on + strand, within GFF2282 at 337.694 kb on - strand, within GFF2282 at 337.694 kb on - strand, within GFF2282 at 337.694 kb on - strand, within GFF2282 at 337.694 kb on - strand, within GFF2282 at 337.694 kb on - strand, within GFF2282
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 335,051 - GFF2280 0.23 +1.4 335,051 - GFF2280 0.23 +0.5 335,216 - GFF2280 0.38 -0.5 335,216 - GFF2280 0.38 -0.9 335,231 - GFF2280 0.39 -0.7 335,231 - GFF2280 0.39 +2.1 335,444 + GFF2280 0.58 -1.2 335,445 - GFF2280 0.58 +1.1 335,445 - GFF2280 0.58 -0.3 335,445 - GFF2280 0.58 +0.1 335,447 - GFF2280 0.58 +4.2 335,447 - GFF2280 0.58 +0.4 335,504 - GFF2280 0.63 -0.3 335,935 + +0.9 335,936 - -0.1 335,936 - +0.6 335,936 - +0.1 336,402 + GFF2281 0.55 -2.5 336,402 + GFF2281 0.55 -1.5 336,403 - GFF2281 0.55 -1.5 337,135 + GFF2282 0.19 -2.0 337,176 + GFF2282 0.22 +1.1 337,176 + GFF2282 0.22 -1.3 337,176 + GFF2282 0.22 -1.7 337,176 + GFF2282 0.22 +2.8 337,176 + GFF2282 0.22 +1.0 337,177 - GFF2282 0.22 +0.6 337,468 + GFF2282 0.37 +2.0 337,594 + GFF2282 0.44 +1.7 337,595 - GFF2282 0.44 +1.0 337,693 + GFF2282 0.49 -1.1 337,693 + GFF2282 0.49 -2.9 337,693 + GFF2282 0.49 -1.8 337,694 - GFF2282 0.49 -0.3 337,694 - GFF2282 0.49 -0.5 337,694 - GFF2282 0.49 -1.3 337,694 - GFF2282 0.49 -0.5 337,694 - GFF2282 0.49 -2.2
Or see this region's nucleotide sequence