Strain Fitness in Variovorax sp. SCN45 around GFF2273

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2271 and GFF2272 are separated by 43 nucleotidesGFF2272 and GFF2273 are separated by 132 nucleotidesGFF2273 and GFF2274 are separated by 23 nucleotidesGFF2274 and GFF2275 are separated by 36 nucleotides GFF2271 - FIG00454722: hypothetical protein, at 325,253 to 325,780 GFF2271 GFF2272 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 325,824 to 326,267 GFF2272 GFF2273 - Transcriptional regulator, AcrR family, at 326,400 to 327,053 GFF2273 GFF2274 - Transcriptional regulator, MarR family, at 327,077 to 327,568 GFF2274 GFF2275 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 327,605 to 329,350 GFF2275 Position (kb) 326 327 328Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.543 kb on - strand, within GFF2271at 325.608 kb on + strand, within GFF2271at 325.608 kb on + strand, within GFF2271at 325.608 kb on + strand, within GFF2271at 325.609 kb on - strand, within GFF2271at 326.167 kb on + strand, within GFF2272at 326.209 kb on + strand, within GFF2272at 326.209 kb on + strand, within GFF2272at 326.209 kb on + strand, within GFF2272at 326.209 kb on + strand, within GFF2272at 326.209 kb on + strand, within GFF2272at 326.209 kb on + strand, within GFF2272at 326.210 kb on - strand, within GFF2272at 326.210 kb on - strand, within GFF2272at 326.210 kb on - strand, within GFF2272at 326.251 kb on + strandat 326.251 kb on + strandat 326.251 kb on + strandat 326.251 kb on + strandat 326.252 kb on - strandat 326.252 kb on - strandat 326.252 kb on - strandat 326.252 kb on - strandat 326.363 kb on + strandat 326.364 kb on - strandat 326.574 kb on + strand, within GFF2273at 326.574 kb on + strand, within GFF2273at 326.574 kb on + strand, within GFF2273at 326.575 kb on - strand, within GFF2273at 326.575 kb on - strand, within GFF2273at 326.733 kb on + strand, within GFF2273at 326.733 kb on + strand, within GFF2273at 326.734 kb on - strand, within GFF2273at 327.051 kb on + strandat 327.052 kb on - strandat 327.061 kb on + strandat 327.061 kb on + strandat 327.062 kb on - strandat 327.062 kb on - strandat 327.062 kb on - strandat 327.062 kb on - strandat 327.069 kb on + strandat 327.069 kb on + strandat 327.070 kb on - strandat 327.070 kb on - strandat 327.070 kb on - strandat 327.070 kb on - strandat 327.070 kb on - strandat 327.071 kb on + strandat 327.072 kb on - strandat 327.072 kb on - strandat 327.072 kb on - strandat 327.078 kb on + strandat 327.078 kb on + strandat 327.078 kb on + strandat 327.079 kb on - strandat 327.079 kb on - strandat 327.079 kb on - strandat 327.084 kb on + strandat 327.084 kb on + strandat 327.462 kb on + strand, within GFF2274at 327.579 kb on + strandat 327.606 kb on + strandat 327.702 kb on - strandat 327.813 kb on + strand, within GFF2275at 327.813 kb on + strand, within GFF2275at 327.831 kb on + strand, within GFF2275at 327.832 kb on - strand, within GFF2275at 327.832 kb on - strand, within GFF2275at 327.882 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.044 kb on + strand, within GFF2275at 328.045 kb on - strand, within GFF2275at 328.045 kb on - strand, within GFF2275at 328.045 kb on - strand, within GFF2275at 328.045 kb on - strand, within GFF2275

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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325,542 + GFF2271 0.55 -0.5
325,542 + GFF2271 0.55 -0.6
325,542 + GFF2271 0.55 +0.4
325,542 + GFF2271 0.55 +0.8
325,542 + GFF2271 0.55 +1.9
325,542 + GFF2271 0.55 +0.5
325,542 + GFF2271 0.55 -1.6
325,542 + GFF2271 0.55 +0.5
325,542 + GFF2271 0.55 -0.3
325,542 + GFF2271 0.55 -0.2
325,543 - GFF2271 0.55 +1.2
325,608 + GFF2271 0.67 -0.7
325,608 + GFF2271 0.67 +1.6
325,608 + GFF2271 0.67 -0.3
325,609 - GFF2271 0.67 +0.3
326,167 + GFF2272 0.77 +1.2
326,209 + GFF2272 0.87 -1.3
326,209 + GFF2272 0.87 -0.7
326,209 + GFF2272 0.87 +0.3
326,209 + GFF2272 0.87 +0.7
326,209 + GFF2272 0.87 -0.5
326,209 + GFF2272 0.87 -2.3
326,210 - GFF2272 0.87 -4.4
326,210 - GFF2272 0.87 +0.5
326,210 - GFF2272 0.87 -2.3
326,251 + +0.3
326,251 + +1.4
326,251 + -2.0
326,251 + +2.1
326,252 - -1.2
326,252 - +0.3
326,252 - -3.3
326,252 - -1.4
326,363 + +3.1
326,364 - -0.2
326,574 + GFF2273 0.27 -3.9
326,574 + GFF2273 0.27 -2.8
326,574 + GFF2273 0.27 -1.1
326,575 - GFF2273 0.27 -4.3
326,575 - GFF2273 0.27 -1.1
326,733 + GFF2273 0.51 -2.6
326,733 + GFF2273 0.51 -4.0
326,734 - GFF2273 0.51 +0.7
327,051 + -2.8
327,052 - -0.5
327,061 + -0.1
327,061 + -3.2
327,062 - +3.1
327,062 - +2.8
327,062 - -0.1
327,062 - -0.3
327,069 + +1.3
327,069 + -0.5
327,070 - -0.8
327,070 - +0.5
327,070 - -1.2
327,070 - +0.7
327,070 - -2.7
327,071 + -0.3
327,072 - -2.5
327,072 - -0.9
327,072 - -3.2
327,078 + -1.4
327,078 + -1.1
327,078 + -1.5
327,079 - -2.0
327,079 - +1.1
327,079 - +0.3
327,084 + +1.3
327,084 + +1.3
327,462 + GFF2274 0.78 -2.4
327,579 + -3.1
327,606 + -0.7
327,702 - +1.0
327,813 + GFF2275 0.12 -2.2
327,813 + GFF2275 0.12 -0.9
327,831 + GFF2275 0.13 -1.5
327,832 - GFF2275 0.13 -1.3
327,832 - GFF2275 0.13 +2.6
327,882 + GFF2275 0.16 +2.2
328,044 + GFF2275 0.25 -3.4
328,044 + GFF2275 0.25 -1.5
328,044 + GFF2275 0.25 -0.3
328,044 + GFF2275 0.25 -3.7
328,044 + GFF2275 0.25 -2.4
328,044 + GFF2275 0.25 -0.5
328,044 + GFF2275 0.25 -0.9
328,045 - GFF2275 0.25 -0.6
328,045 - GFF2275 0.25 +1.1
328,045 - GFF2275 0.25 -1.3
328,045 - GFF2275 0.25 -2.5

Or see this region's nucleotide sequence