Strain Fitness in Variovorax sp. SCN45 around GFF2239

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
297,863	-				-1.9
297,955	+				-2.5
297,956	-				-1.5
298,072	-		GFF2238	0.11	-0.3
298,204	-		GFF2238	0.40	+2.3
298,243	-		GFF2238	0.48	+0.8
298,243	-		GFF2238	0.48	-1.0
298,580	-				+0.2
298,580	-				+1.1
298,580	-				-0.8
298,633	+				+4.8
298,633	+				+1.8
298,634	-				-1.9
298,634	-				-2.8
298,679	-				+2.1
298,679	-				-0.7
298,679	-				+0.8
298,739	+				-3.1
298,739	+				-1.8
298,739	+				+2.1
298,739	+				+0.2
299,049	+		GFF2239	0.71	-3.6
299,169	+				-4.2
299,169	+				-2.0
299,169	+				+0.4
299,169	+				+0.7
299,169	+				+1.1
299,170	-				-1.5
299,170	-				-1.7
299,170	-				-0.8
299,437	-		GFF2240	0.47	-2.1
299,544	+		GFF2240	0.68	-1.3
299,667	+				-0.4
299,974	+		GFF2241	0.24	-2.3
299,975	-		GFF2241	0.24	-2.0
299,980	+		GFF2241	0.25	+0.6
299,981	-		GFF2241	0.25	-1.6
299,981	-		GFF2241	0.25	-0.9
299,981	-		GFF2241	0.25	+1.2