Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2219 and GFF2220 are separated by 117 nucleotides GFF2220 and GFF2221 are separated by 45 nucleotides
GFF2219 - FIG00454641: hypothetical protein, at 280,531 to 281,538
GFF2219
GFF2220 - Aldehyde dehydrogenase (EC 1.2.1.3), at 281,656 to 283,134
GFF2220
GFF2221 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 283,180 to 284,433
GFF2221
Position (kb) 281
282
283
284 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 280.705 kb on + strand, within GFF2219 at 280.705 kb on + strand, within GFF2219 at 280.705 kb on + strand, within GFF2219 at 280.706 kb on - strand, within GFF2219 at 280.748 kb on - strand, within GFF2219 at 280.792 kb on + strand, within GFF2219 at 280.793 kb on - strand, within GFF2219 at 280.810 kb on + strand, within GFF2219 at 280.811 kb on - strand, within GFF2219 at 280.811 kb on - strand, within GFF2219 at 280.811 kb on - strand, within GFF2219 at 281.242 kb on + strand, within GFF2219 at 281.242 kb on + strand, within GFF2219 at 281.242 kb on + strand, within GFF2219 at 281.242 kb on + strand, within GFF2219 at 281.242 kb on + strand, within GFF2219 at 281.242 kb on + strand, within GFF2219 at 281.242 kb on + strand, within GFF2219 at 281.242 kb on + strand, within GFF2219 at 281.242 kb on + strand, within GFF2219 at 281.243 kb on - strand, within GFF2219 at 281.243 kb on - strand, within GFF2219 at 281.243 kb on - strand, within GFF2219 at 281.243 kb on - strand, within GFF2219 at 281.243 kb on - strand, within GFF2219 at 281.243 kb on - strand, within GFF2219 at 281.243 kb on - strand, within GFF2219 at 281.243 kb on - strand, within GFF2219 at 281.243 kb on - strand, within GFF2219 at 281.243 kb on - strand, within GFF2219 at 281.243 kb on - strand, within GFF2219 at 281.417 kb on - strand, within GFF2219 at 281.417 kb on - strand, within GFF2219 at 281.491 kb on + strand at 281.491 kb on + strand at 281.491 kb on + strand at 281.491 kb on + strand at 281.492 kb on - strand at 281.492 kb on - strand at 282.067 kb on + strand, within GFF2220 at 282.067 kb on + strand, within GFF2220 at 282.068 kb on - strand, within GFF2220 at 282.068 kb on - strand, within GFF2220 at 282.301 kb on + strand, within GFF2220 at 282.301 kb on + strand, within GFF2220 at 282.301 kb on + strand, within GFF2220 at 282.301 kb on + strand, within GFF2220 at 282.674 kb on - strand, within GFF2220 at 282.674 kb on - strand, within GFF2220 at 282.674 kb on - strand, within GFF2220 at 282.754 kb on + strand, within GFF2220 at 282.755 kb on - strand, within GFF2220 at 282.755 kb on - strand, within GFF2220 at 282.755 kb on - strand, within GFF2220 at 282.755 kb on - strand, within GFF2220 at 282.755 kb on - strand, within GFF2220 at 282.787 kb on + strand, within GFF2220 at 282.982 kb on + strand, within GFF2220 at 282.983 kb on - strand, within GFF2220 at 282.983 kb on - strand, within GFF2220 at 282.983 kb on - strand, within GFF2220 at 282.983 kb on - strand, within GFF2220 at 282.983 kb on - strand, within GFF2220 at 283.279 kb on + strand at 283.280 kb on - strand at 283.280 kb on - strand at 283.390 kb on + strand, within GFF2221 at 283.390 kb on + strand, within GFF2221 at 283.633 kb on + strand, within GFF2221 at 283.633 kb on + strand, within GFF2221 at 283.633 kb on + strand, within GFF2221 at 283.633 kb on + strand, within GFF2221 at 283.633 kb on + strand, within GFF2221 at 283.634 kb on - strand, within GFF2221 at 283.634 kb on - strand, within GFF2221 at 283.634 kb on - strand, within GFF2221
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 280,705 + GFF2219 0.17 -1.1 280,705 + GFF2219 0.17 -1.1 280,705 + GFF2219 0.17 -0.2 280,706 - GFF2219 0.17 -0.4 280,748 - GFF2219 0.22 +0.5 280,792 + GFF2219 0.26 -0.7 280,793 - GFF2219 0.26 -2.0 280,810 + GFF2219 0.28 -0.5 280,811 - GFF2219 0.28 -1.9 280,811 - GFF2219 0.28 -0.7 280,811 - GFF2219 0.28 -3.6 281,242 + GFF2219 0.71 +0.4 281,242 + GFF2219 0.71 -2.0 281,242 + GFF2219 0.71 -2.7 281,242 + GFF2219 0.71 -1.1 281,242 + GFF2219 0.71 +3.1 281,242 + GFF2219 0.71 -1.4 281,242 + GFF2219 0.71 +0.3 281,242 + GFF2219 0.71 +2.7 281,242 + GFF2219 0.71 +1.2 281,243 - GFF2219 0.71 -3.0 281,243 - GFF2219 0.71 +1.4 281,243 - GFF2219 0.71 +0.4 281,243 - GFF2219 0.71 +1.7 281,243 - GFF2219 0.71 -1.4 281,243 - GFF2219 0.71 -2.9 281,243 - GFF2219 0.71 -0.1 281,243 - GFF2219 0.71 -2.8 281,243 - GFF2219 0.71 +1.3 281,243 - GFF2219 0.71 -3.1 281,243 - GFF2219 0.71 +1.3 281,417 - GFF2219 0.88 +1.2 281,417 - GFF2219 0.88 -0.5 281,491 + +0.3 281,491 + -0.3 281,491 + +1.9 281,491 + +0.4 281,492 - -0.2 281,492 - +0.2 282,067 + GFF2220 0.28 -1.7 282,067 + GFF2220 0.28 -0.8 282,068 - GFF2220 0.28 -2.9 282,068 - GFF2220 0.28 -4.5 282,301 + GFF2220 0.44 -0.8 282,301 + GFF2220 0.44 -0.7 282,301 + GFF2220 0.44 +0.3 282,301 + GFF2220 0.44 -0.5 282,674 - GFF2220 0.69 +4.2 282,674 - GFF2220 0.69 -1.7 282,674 - GFF2220 0.69 -0.3 282,754 + GFF2220 0.74 -0.9 282,755 - GFF2220 0.74 -1.1 282,755 - GFF2220 0.74 +0.3 282,755 - GFF2220 0.74 -1.2 282,755 - GFF2220 0.74 -0.5 282,755 - GFF2220 0.74 -3.9 282,787 + GFF2220 0.76 -2.6 282,982 + GFF2220 0.90 +0.9 282,983 - GFF2220 0.90 +1.4 282,983 - GFF2220 0.90 -0.2 282,983 - GFF2220 0.90 +0.6 282,983 - GFF2220 0.90 -1.6 282,983 - GFF2220 0.90 -2.2 283,279 + -2.6 283,280 - -1.3 283,280 - -1.6 283,390 + GFF2221 0.17 +0.8 283,390 + GFF2221 0.17 +0.3 283,633 + GFF2221 0.36 -0.6 283,633 + GFF2221 0.36 -0.2 283,633 + GFF2221 0.36 -0.2 283,633 + GFF2221 0.36 -1.2 283,633 + GFF2221 0.36 -0.5 283,634 - GFF2221 0.36 -1.7 283,634 - GFF2221 0.36 -0.5 283,634 - GFF2221 0.36 -3.1
Or see this region's nucleotide sequence