Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF219 and GFF220 overlap by 4 nucleotides GFF220 and GFF221 are separated by 2 nucleotides GFF221 and GFF222 are separated by 21 nucleotides
GFF219 - GTP-binding protein TypA/BipA, at 243,079 to 244,917
GFF219
GFF220 - tRNA pseudouridine(55) synthase (EC 5.4.99.25), at 244,914 to 245,879
GFF220
GFF221 - Ribosome-binding factor A, at 245,882 to 246,253
GFF221
GFF222 - Translation initiation factor 2, at 246,275 to 249,256
GFF222
Position (kb) 244
245
246 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 244.424 kb on + strand, within GFF219 at 244.425 kb on - strand, within GFF219 at 244.893 kb on + strand at 244.911 kb on + strand at 244.912 kb on - strand at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.458 kb on + strand, within GFF220 at 245.458 kb on + strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.464 kb on + strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.647 kb on + strand, within GFF220 at 245.647 kb on + strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.883 kb on + strand at 245.884 kb on - strand at 245.884 kb on - strand at 245.884 kb on - strand at 246.276 kb on + strand at 246.277 kb on - strand at 246.277 kb on - strand at 246.277 kb on - strand at 246.277 kb on - strand at 246.277 kb on - strand at 246.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 244,424 + GFF219 0.73 +2.1 244,425 - GFF219 0.73 -1.0 244,893 + -1.2 244,911 + +0.0 244,912 - -1.9 245,329 + GFF220 0.43 -1.7 245,329 + GFF220 0.43 -1.0 245,329 + GFF220 0.43 +1.6 245,329 + GFF220 0.43 -1.6 245,329 + GFF220 0.43 +0.7 245,329 + GFF220 0.43 +3.6 245,329 + GFF220 0.43 -2.1 245,329 + GFF220 0.43 -2.3 245,329 + GFF220 0.43 -1.1 245,329 + GFF220 0.43 -0.6 245,329 + GFF220 0.43 -0.4 245,329 + GFF220 0.43 -1.2 245,329 + GFF220 0.43 -3.1 245,329 + GFF220 0.43 -2.2 245,329 + GFF220 0.43 -2.2 245,330 - GFF220 0.43 -1.0 245,330 - GFF220 0.43 -1.7 245,330 - GFF220 0.43 -4.1 245,330 - GFF220 0.43 -2.0 245,330 - GFF220 0.43 +0.6 245,330 - GFF220 0.43 -1.4 245,458 + GFF220 0.56 -1.7 245,458 + GFF220 0.56 +1.0 245,459 - GFF220 0.56 -0.3 245,459 - GFF220 0.56 +0.8 245,459 - GFF220 0.56 -3.2 245,459 - GFF220 0.56 -2.4 245,459 - GFF220 0.56 -1.0 245,459 - GFF220 0.56 -1.1 245,459 - GFF220 0.56 -1.6 245,459 - GFF220 0.56 +0.7 245,464 + GFF220 0.57 +0.0 245,465 - GFF220 0.57 -0.6 245,465 - GFF220 0.57 -3.5 245,465 - GFF220 0.57 -1.3 245,465 - GFF220 0.57 -2.3 245,465 - GFF220 0.57 -3.2 245,465 - GFF220 0.57 +1.0 245,647 + GFF220 0.76 +0.0 245,647 + GFF220 0.76 -2.9 245,648 - GFF220 0.76 -2.0 245,648 - GFF220 0.76 -1.2 245,648 - GFF220 0.76 +2.0 245,648 - GFF220 0.76 +0.7 245,648 - GFF220 0.76 +3.4 245,883 + -1.2 245,884 - -1.6 245,884 - +0.4 245,884 - +1.4 246,276 + -2.2 246,277 - -1.3 246,277 - -1.4 246,277 - -0.8 246,277 - -3.6 246,277 - -2.6 246,277 - +1.1
Or see this region's nucleotide sequence