Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2191 and GFF2192 are separated by 0 nucleotides GFF2192 and GFF2193 are separated by 300 nucleotides
GFF2191 - Pca operon transcriptional activator PcaQ, at 246,863 to 247,864
GFF2191
GFF2192 - FIG00932626: hypothetical protein, at 247,865 to 248,299
GFF2192
GFF2193 - PE_PGRS, at 248,600 to 252,736
GFF2193
Position (kb) 247
248
249 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 247.500 kb on - strand, within GFF2191 at 247.500 kb on - strand, within GFF2191 at 247.500 kb on - strand, within GFF2191 at 247.500 kb on - strand, within GFF2191 at 247.902 kb on + strand at 247.903 kb on - strand at 247.903 kb on - strand at 247.903 kb on - strand at 247.903 kb on - strand at 248.127 kb on + strand, within GFF2192 at 248.127 kb on + strand, within GFF2192 at 248.128 kb on - strand, within GFF2192 at 248.172 kb on + strand, within GFF2192 at 248.250 kb on + strand, within GFF2192 at 248.251 kb on - strand, within GFF2192 at 248.251 kb on - strand, within GFF2192 at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.299 kb on + strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.300 kb on - strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.301 kb on + strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.302 kb on - strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.303 kb on + strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.304 kb on - strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.307 kb on + strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.308 kb on - strand at 248.322 kb on + strand at 248.408 kb on - strand at 248.408 kb on - strand at 248.408 kb on - strand at 248.414 kb on + strand at 248.414 kb on + strand at 248.419 kb on + strand at 248.419 kb on + strand at 248.420 kb on - strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.443 kb on + strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.444 kb on - strand at 248.495 kb on + strand at 248.496 kb on - strand at 248.497 kb on + strand at 248.498 kb on - strand at 248.559 kb on + strand at 248.560 kb on - strand at 248.560 kb on - strand at 248.560 kb on - strand at 248.560 kb on - strand at 248.560 kb on - strand at 248.560 kb on - strand at 248.573 kb on + strand at 248.574 kb on - strand at 248.574 kb on - strand at 248.634 kb on + strand at 248.634 kb on + strand at 248.635 kb on - strand at 248.635 kb on - strand at 248.635 kb on - strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.668 kb on + strand at 248.669 kb on - strand at 248.669 kb on - strand at 248.669 kb on - strand at 248.669 kb on - strand at 248.669 kb on - strand at 248.669 kb on - strand at 248.686 kb on + strand at 248.686 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 247,500 - GFF2191 0.64 -1.4 247,500 - GFF2191 0.64 -2.9 247,500 - GFF2191 0.64 +0.8 247,500 - GFF2191 0.64 -1.4 247,902 + -2.2 247,903 - -3.6 247,903 - -0.2 247,903 - +0.5 247,903 - +0.5 248,127 + GFF2192 0.60 -2.4 248,127 + GFF2192 0.60 -1.6 248,128 - GFF2192 0.60 -1.0 248,172 + GFF2192 0.71 -0.7 248,250 + GFF2192 0.89 +0.1 248,251 - GFF2192 0.89 -2.7 248,251 - GFF2192 0.89 -1.9 248,299 + -0.6 248,299 + +0.5 248,299 + -3.4 248,299 + +0.7 248,299 + -0.8 248,299 + -0.2 248,299 + +0.1 248,299 + -3.2 248,299 + -1.6 248,299 + -0.9 248,299 + -1.4 248,299 + -0.4 248,299 + -0.4 248,299 + +1.1 248,299 + -0.2 248,300 - -1.0 248,300 - +1.2 248,300 - +0.5 248,300 - -1.1 248,300 - +1.1 248,300 - -2.8 248,300 - -1.1 248,300 - +0.8 248,300 - -1.4 248,300 - -0.8 248,300 - -1.7 248,300 - +1.9 248,300 - -2.0 248,300 - -2.2 248,300 - +0.0 248,300 - -0.9 248,301 + -0.1 248,301 + -0.9 248,301 + -0.9 248,301 + -0.0 248,301 + +0.4 248,301 + -1.6 248,301 + -0.9 248,301 + -1.9 248,301 + +0.1 248,301 + +2.1 248,301 + +0.9 248,301 + -0.6 248,301 + -2.8 248,301 + -1.8 248,301 + +0.4 248,301 + -0.3 248,301 + +0.4 248,301 + -1.8 248,301 + -0.2 248,301 + +2.1 248,301 + +0.4 248,301 + -1.1 248,301 + +0.3 248,301 + +0.8 248,301 + -1.7 248,301 + -0.3 248,301 + -1.4 248,301 + -0.7 248,301 + -1.9 248,301 + -3.1 248,301 + -0.6 248,301 + -0.8 248,301 + +1.4 248,301 + -0.9 248,301 + -1.9 248,301 + +0.1 248,301 + +0.7 248,301 + -2.6 248,301 + +0.3 248,301 + -0.2 248,301 + -1.2 248,301 + -0.4 248,301 + -1.6 248,301 + +0.5 248,301 + -2.4 248,301 + -2.4 248,301 + -3.6 248,301 + +1.0 248,301 + -2.5 248,301 + -0.5 248,301 + -0.2 248,301 + -1.0 248,301 + +0.9 248,301 + +2.1 248,302 - +0.1 248,302 - +4.1 248,302 - +0.6 248,302 - -0.5 248,302 - +0.5 248,302 - -0.9 248,302 - +0.2 248,302 - +2.9 248,302 - +1.6 248,302 - -0.6 248,302 - -0.8 248,302 - +2.4 248,302 - +0.2 248,302 - +0.5 248,302 - +0.1 248,302 - -1.6 248,302 - -2.0 248,302 - -0.6 248,302 - +0.1 248,302 - -3.1 248,302 - +0.1 248,302 - -1.2 248,302 - -1.2 248,302 - -1.4 248,302 - +2.2 248,302 - -0.9 248,302 - +0.5 248,302 - -2.1 248,302 - -1.7 248,302 - +1.4 248,302 - +0.8 248,302 - +2.7 248,302 - +0.7 248,302 - -0.7 248,302 - -1.4 248,302 - +1.8 248,302 - +0.7 248,302 - -0.1 248,302 - -3.0 248,302 - -0.8 248,302 - -4.0 248,302 - -1.6 248,302 - -0.5 248,302 - -0.8 248,302 - +0.2 248,302 - -0.0 248,302 - -1.5 248,302 - +0.5 248,302 - -2.2 248,302 - -0.8 248,302 - -2.8 248,302 - -0.9 248,302 - +1.4 248,302 - -0.2 248,302 - -1.5 248,303 + +1.8 248,303 + -3.4 248,303 + +0.7 248,303 + -2.3 248,303 + +0.8 248,303 + +0.1 248,303 + -1.4 248,303 + +0.0 248,303 + -2.2 248,303 + +0.9 248,303 + -2.4 248,303 + -1.4 248,303 + -1.6 248,303 + -0.2 248,303 + -0.3 248,303 + +0.5 248,303 + -3.0 248,303 + -1.9 248,303 + -0.2 248,303 + +0.0 248,303 + +1.5 248,303 + +2.8 248,303 + -0.9 248,303 + +1.5 248,303 + -1.3 248,303 + -1.8 248,303 + +0.5 248,303 + -1.2 248,303 + +0.5 248,303 + -0.5 248,303 + -0.0 248,303 + -1.2 248,303 + -0.7 248,303 + +1.2 248,304 - -1.7 248,304 - +2.1 248,304 - +0.8 248,304 - -1.0 248,304 - -0.5 248,304 - -1.1 248,304 - -0.9 248,304 - -3.4 248,304 - -1.6 248,304 - +1.0 248,304 - +1.5 248,304 - -1.1 248,304 - -0.2 248,304 - +0.2 248,304 - +3.8 248,304 - -1.7 248,304 - -1.2 248,304 - +0.5 248,304 - -0.9 248,304 - -0.5 248,304 - -1.5 248,304 - -0.1 248,304 - -0.2 248,304 - -0.7 248,304 - -1.0 248,304 - +0.5 248,304 - +0.8 248,304 - +0.6 248,304 - -0.6 248,304 - +2.1 248,304 - -0.0 248,304 - -1.6 248,304 - -2.1 248,304 - -2.6 248,304 - -2.2 248,304 - -0.7 248,304 - -1.1 248,304 - +1.9 248,304 - -1.4 248,304 - +0.5 248,304 - +1.1 248,304 - +0.8 248,304 - -0.4 248,304 - -0.0 248,304 - +1.1 248,304 - -3.0 248,304 - -0.2 248,304 - -0.3 248,304 - +2.7 248,304 - +1.0 248,307 + -0.1 248,307 + -0.7 248,307 + +0.5 248,307 + -0.9 248,307 + -0.5 248,307 + -0.7 248,307 + +0.2 248,307 + +0.9 248,307 + +1.1 248,307 + -2.9 248,307 + +1.5 248,307 + +1.0 248,307 + +0.8 248,307 + -0.2 248,307 + +0.8 248,307 + +1.2 248,307 + +2.9 248,307 + -0.8 248,307 + -0.6 248,307 + -1.9 248,307 + -0.6 248,307 + -4.3 248,307 + -2.6 248,307 + +0.6 248,307 + +1.6 248,307 + +1.9 248,308 - -0.9 248,308 - +0.6 248,308 - -1.8 248,308 - +1.4 248,308 - -0.8 248,308 - +0.3 248,308 - -0.7 248,308 - -2.6 248,308 - -0.9 248,308 - +0.9 248,308 - -2.3 248,308 - -2.8 248,308 - +2.1 248,308 - -1.2 248,308 - +1.5 248,308 - -0.6 248,322 + -4.2 248,408 - -4.1 248,408 - -2.2 248,408 - -0.8 248,414 + -0.7 248,414 + -0.7 248,419 + -1.2 248,419 + -0.7 248,420 - -1.7 248,443 + -0.6 248,443 + -0.5 248,443 + +0.2 248,443 + -1.0 248,443 + +0.2 248,443 + -0.2 248,443 + -2.9 248,443 + +0.8 248,444 - -0.7 248,444 - -2.6 248,444 - -1.5 248,444 - +1.7 248,444 - -0.4 248,444 - +1.6 248,444 - -1.5 248,444 - -0.5 248,444 - +0.3 248,444 - -2.2 248,495 + -3.2 248,496 - +0.3 248,497 + -0.5 248,498 - -0.5 248,559 + -3.7 248,560 - +0.2 248,560 - -0.9 248,560 - -2.2 248,560 - +1.3 248,560 - -1.8 248,560 - +0.4 248,573 + -2.0 248,574 - -1.2 248,574 - -1.6 248,634 + +1.8 248,634 + +1.9 248,635 - +0.1 248,635 - +0.5 248,635 - +0.5 248,668 + +0.1 248,668 + +3.0 248,668 + +1.0 248,668 + +1.1 248,668 + +0.1 248,668 + -1.6 248,668 + -2.4 248,668 + -0.1 248,669 - +0.2 248,669 - +1.7 248,669 - +0.2 248,669 - -1.3 248,669 - +1.1 248,669 - +0.1 248,686 + -2.8 248,686 + -0.7
Or see this region's nucleotide sequence