Strain Fitness in Variovorax sp. SCN45 around GFF2190

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2188 and GFF2189 are separated by 68 nucleotidesGFF2189 and GFF2190 are separated by 17 nucleotidesGFF2190 and GFF2191 are separated by 104 nucleotides GFF2188 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 244,646 to 245,338 GFF2188 GFF2189 - Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3), at 245,407 to 246,015 GFF2189 GFF2190 - Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3), at 246,033 to 246,758 GFF2190 GFF2191 - Pca operon transcriptional activator PcaQ, at 246,863 to 247,864 GFF2191 Position (kb) 246 247Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 245.141 kb on + strand, within GFF2188at 245.141 kb on + strand, within GFF2188at 245.142 kb on - strand, within GFF2188at 245.142 kb on - strand, within GFF2188at 245.142 kb on - strand, within GFF2188at 245.142 kb on - strand, within GFF2188at 245.165 kb on + strand, within GFF2188at 245.165 kb on + strand, within GFF2188at 245.166 kb on - strand, within GFF2188at 245.166 kb on - strand, within GFF2188at 245.270 kb on + strandat 245.270 kb on + strandat 245.270 kb on + strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.336 kb on + strandat 245.337 kb on - strandat 245.462 kb on + strandat 245.463 kb on - strandat 245.576 kb on + strand, within GFF2189at 245.577 kb on - strand, within GFF2189at 245.697 kb on - strand, within GFF2189at 245.700 kb on + strand, within GFF2189at 245.924 kb on + strand, within GFF2189at 245.925 kb on - strand, within GFF2189at 245.925 kb on - strand, within GFF2189at 246.100 kb on + strandat 246.101 kb on - strandat 246.152 kb on - strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.185 kb on - strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.595 kb on + strand, within GFF2190at 246.596 kb on - strand, within GFF2190at 246.596 kb on - strand, within GFF2190at 246.676 kb on + strand, within GFF2190at 246.676 kb on + strand, within GFF2190at 246.676 kb on + strand, within GFF2190at 246.685 kb on + strand, within GFF2190at 246.686 kb on - strandat 246.691 kb on + strandat 246.691 kb on + strandat 246.691 kb on + strandat 246.691 kb on + strandat 246.691 kb on + strandat 246.691 kb on + strandat 246.691 kb on + strandat 246.691 kb on + strandat 246.691 kb on + strandat 246.691 kb on + strandat 246.691 kb on + strandat 246.691 kb on + strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.692 kb on - strandat 246.824 kb on + strandat 246.825 kb on - strandat 246.825 kb on - strandat 247.500 kb on - strand, within GFF2191at 247.500 kb on - strand, within GFF2191at 247.500 kb on - strand, within GFF2191at 247.500 kb on - strand, within GFF2191

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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245,141 + GFF2188 0.71 -3.0
245,141 + GFF2188 0.71 -0.7
245,142 - GFF2188 0.72 +0.1
245,142 - GFF2188 0.72 +0.2
245,142 - GFF2188 0.72 +0.2
245,142 - GFF2188 0.72 +1.7
245,165 + GFF2188 0.75 +0.8
245,165 + GFF2188 0.75 +0.3
245,166 - GFF2188 0.75 +1.3
245,166 - GFF2188 0.75 -3.1
245,270 + -1.5
245,270 + -0.0
245,270 + -0.9
245,271 - +1.1
245,271 - -3.2
245,271 - -1.1
245,271 - +0.1
245,271 - -0.2
245,271 - +0.9
245,271 - -1.9
245,271 - +0.2
245,271 - -1.3
245,271 - +2.0
245,336 + -0.6
245,337 - +3.1
245,462 + -0.2
245,463 - -4.1
245,576 + GFF2189 0.28 -3.3
245,577 - GFF2189 0.28 +0.4
245,697 - GFF2189 0.48 +0.6
245,700 + GFF2189 0.48 +0.1
245,924 + GFF2189 0.85 -1.3
245,925 - GFF2189 0.85 -0.9
245,925 - GFF2189 0.85 +0.6
246,100 + +1.4
246,101 - +1.8
246,152 - GFF2190 0.16 -5.0
246,184 + GFF2190 0.21 -0.2
246,184 + GFF2190 0.21 +0.4
246,184 + GFF2190 0.21 -2.8
246,184 + GFF2190 0.21 -0.2
246,184 + GFF2190 0.21 -3.2
246,184 + GFF2190 0.21 -1.1
246,185 - GFF2190 0.21 -0.7
246,211 + GFF2190 0.25 -0.7
246,211 + GFF2190 0.25 -0.1
246,211 + GFF2190 0.25 +1.6
246,211 + GFF2190 0.25 -0.9
246,211 + GFF2190 0.25 -1.2
246,211 + GFF2190 0.25 +2.4
246,211 + GFF2190 0.25 +1.2
246,211 + GFF2190 0.25 -2.7
246,211 + GFF2190 0.25 -0.3
246,211 + GFF2190 0.25 -2.3
246,211 + GFF2190 0.25 +0.5
246,211 + GFF2190 0.25 +1.6
246,211 + GFF2190 0.25 +0.3
246,212 - GFF2190 0.25 -1.4
246,212 - GFF2190 0.25 -3.2
246,212 - GFF2190 0.25 -3.0
246,212 - GFF2190 0.25 -0.7
246,212 - GFF2190 0.25 -2.0
246,212 - GFF2190 0.25 -0.2
246,212 - GFF2190 0.25 -1.4
246,212 - GFF2190 0.25 -1.2
246,212 - GFF2190 0.25 +1.6
246,212 - GFF2190 0.25 -2.2
246,212 - GFF2190 0.25 -1.4
246,212 - GFF2190 0.25 -2.1
246,212 - GFF2190 0.25 -4.3
246,212 - GFF2190 0.25 -2.3
246,212 - GFF2190 0.25 -1.1
246,212 - GFF2190 0.25 +0.5
246,212 - GFF2190 0.25 +2.4
246,212 - GFF2190 0.25 -1.4
246,212 - GFF2190 0.25 +0.5
246,212 - GFF2190 0.25 -0.1
246,212 - GFF2190 0.25 +2.4
246,595 + GFF2190 0.77 -0.1
246,596 - GFF2190 0.78 -1.1
246,596 - GFF2190 0.78 -0.5
246,676 + GFF2190 0.89 -1.1
246,676 + GFF2190 0.89 -2.1
246,676 + GFF2190 0.89 -1.1
246,685 + GFF2190 0.90 +2.9
246,686 - -3.5
246,691 + -0.9
246,691 + +0.2
246,691 + +1.2
246,691 + +0.2
246,691 + +0.3
246,691 + -0.7
246,691 + -0.4
246,691 + +0.5
246,691 + -2.4
246,691 + -1.6
246,691 + -2.2
246,691 + -0.2
246,692 - +1.6
246,692 - -0.4
246,692 - +0.4
246,692 - -1.6
246,692 - +0.5
246,692 - -1.2
246,692 - -2.2
246,692 - -0.6
246,692 - -3.7
246,692 - -0.6
246,692 - -2.6
246,692 - -0.5
246,692 - +0.9
246,692 - +0.0
246,692 - -0.7
246,692 - -0.3
246,824 + -0.7
246,825 - +1.1
246,825 - +0.1
247,500 - GFF2191 0.64 -1.4
247,500 - GFF2191 0.64 -2.9
247,500 - GFF2191 0.64 +0.8
247,500 - GFF2191 0.64 -1.4

Or see this region's nucleotide sequence