Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2163 and GFF2164 are separated by 158 nucleotides GFF2164 and GFF2165 are separated by 140 nucleotides
GFF2163 - hypothetical protein, at 215,792 to 216,883
GFF2163
GFF2164 - Transcriptional regulator, IclR family, at 217,042 to 217,884
GFF2164
GFF2165 - Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, at 218,025 to 219,785
GFF2165
Position (kb) 217
218 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 216.284 kb on + strand, within GFF2163 at 216.284 kb on + strand, within GFF2163 at 216.284 kb on + strand, within GFF2163 at 216.285 kb on - strand, within GFF2163 at 216.285 kb on - strand, within GFF2163 at 216.285 kb on - strand, within GFF2163 at 216.309 kb on + strand, within GFF2163 at 216.337 kb on - strand, within GFF2163 at 216.337 kb on - strand, within GFF2163 at 216.396 kb on + strand, within GFF2163 at 216.396 kb on + strand, within GFF2163 at 216.396 kb on + strand, within GFF2163 at 216.396 kb on + strand, within GFF2163 at 216.396 kb on + strand, within GFF2163 at 216.397 kb on - strand, within GFF2163 at 216.397 kb on - strand, within GFF2163 at 216.397 kb on - strand, within GFF2163 at 216.397 kb on - strand, within GFF2163 at 216.433 kb on - strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.540 kb on + strand, within GFF2163 at 216.540 kb on + strand, within GFF2163 at 216.540 kb on + strand, within GFF2163 at 216.541 kb on - strand, within GFF2163 at 216.541 kb on - strand, within GFF2163 at 216.541 kb on - strand, within GFF2163 at 216.541 kb on - strand, within GFF2163 at 216.570 kb on + strand, within GFF2163 at 216.570 kb on + strand, within GFF2163 at 216.570 kb on + strand, within GFF2163 at 216.570 kb on + strand, within GFF2163 at 216.571 kb on - strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.724 kb on - strand, within GFF2163 at 216.724 kb on - strand, within GFF2163 at 216.831 kb on + strand at 216.831 kb on + strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.925 kb on + strand at 216.926 kb on - strand at 217.012 kb on + strand at 217.013 kb on - strand at 217.033 kb on + strand at 217.034 kb on - strand at 217.275 kb on - strand, within GFF2164 at 217.394 kb on + strand, within GFF2164 at 217.394 kb on + strand, within GFF2164 at 217.394 kb on + strand, within GFF2164 at 217.395 kb on - strand, within GFF2164 at 217.395 kb on - strand, within GFF2164 at 217.424 kb on + strand, within GFF2164 at 217.424 kb on + strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.646 kb on + strand, within GFF2164 at 217.700 kb on + strand, within GFF2164 at 217.700 kb on + strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.975 kb on + strand at 217.976 kb on - strand at 217.976 kb on - strand at 217.976 kb on - strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.993 kb on - strand at 217.993 kb on - strand at 217.993 kb on - strand at 217.993 kb on - strand at 217.999 kb on + strand at 217.999 kb on + strand at 218.000 kb on - strand at 218.000 kb on - strand at 218.250 kb on + strand, within GFF2165 at 218.250 kb on + strand, within GFF2165 at 218.250 kb on + strand, within GFF2165 at 218.250 kb on + strand, within GFF2165 at 218.250 kb on + strand, within GFF2165 at 218.250 kb on + strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.385 kb on + strand, within GFF2165 at 218.385 kb on + strand, within GFF2165 at 218.385 kb on + strand, within GFF2165 at 218.385 kb on + strand, within GFF2165 at 218.583 kb on + strand, within GFF2165 at 218.583 kb on + strand, within GFF2165 at 218.583 kb on + strand, within GFF2165 at 218.583 kb on + strand, within GFF2165 at 218.583 kb on + strand, within GFF2165 at 218.584 kb on - strand, within GFF2165 at 218.584 kb on - strand, within GFF2165 at 218.584 kb on - strand, within GFF2165 at 218.584 kb on - strand, within GFF2165 at 218.749 kb on - strand, within GFF2165 at 218.794 kb on + strand, within GFF2165 at 218.794 kb on + strand, within GFF2165 at 218.794 kb on + strand, within GFF2165 at 218.794 kb on + strand, within GFF2165 at 218.795 kb on - strand, within GFF2165 at 218.845 kb on - strand, within GFF2165
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 216,284 + GFF2163 0.45 -1.4 216,284 + GFF2163 0.45 -1.0 216,284 + GFF2163 0.45 -0.9 216,285 - GFF2163 0.45 +2.2 216,285 - GFF2163 0.45 +0.1 216,285 - GFF2163 0.45 +2.4 216,309 + GFF2163 0.47 -1.0 216,337 - GFF2163 0.50 -0.5 216,337 - GFF2163 0.50 +2.2 216,396 + GFF2163 0.55 -0.1 216,396 + GFF2163 0.55 -2.3 216,396 + GFF2163 0.55 +1.0 216,396 + GFF2163 0.55 +0.9 216,396 + GFF2163 0.55 -2.4 216,397 - GFF2163 0.55 +0.3 216,397 - GFF2163 0.55 -1.7 216,397 - GFF2163 0.55 +0.9 216,397 - GFF2163 0.55 -0.7 216,433 - GFF2163 0.59 +1.3 216,471 + GFF2163 0.62 -1.1 216,471 + GFF2163 0.62 +0.5 216,471 + GFF2163 0.62 -2.1 216,471 + GFF2163 0.62 +2.4 216,471 + GFF2163 0.62 -2.6 216,471 + GFF2163 0.62 +1.4 216,471 + GFF2163 0.62 -1.5 216,471 + GFF2163 0.62 -0.7 216,471 + GFF2163 0.62 +0.4 216,471 + GFF2163 0.62 +0.5 216,472 - GFF2163 0.62 -0.7 216,472 - GFF2163 0.62 +0.3 216,472 - GFF2163 0.62 -1.5 216,472 - GFF2163 0.62 -1.1 216,472 - GFF2163 0.62 +1.0 216,472 - GFF2163 0.62 -1.5 216,472 - GFF2163 0.62 -0.6 216,472 - GFF2163 0.62 -0.7 216,472 - GFF2163 0.62 +1.4 216,472 - GFF2163 0.62 +0.3 216,472 - GFF2163 0.62 +2.5 216,472 - GFF2163 0.62 +0.2 216,540 + GFF2163 0.68 -0.9 216,540 + GFF2163 0.68 -1.7 216,540 + GFF2163 0.68 +2.1 216,541 - GFF2163 0.69 +0.3 216,541 - GFF2163 0.69 +0.5 216,541 - GFF2163 0.69 +2.3 216,541 - GFF2163 0.69 -2.9 216,570 + GFF2163 0.71 -0.4 216,570 + GFF2163 0.71 -2.9 216,570 + GFF2163 0.71 -1.5 216,570 + GFF2163 0.71 +1.6 216,571 - GFF2163 0.71 -1.7 216,705 + GFF2163 0.84 -0.9 216,705 + GFF2163 0.84 +1.6 216,705 + GFF2163 0.84 -0.9 216,705 + GFF2163 0.84 -0.3 216,705 + GFF2163 0.84 -3.3 216,705 + GFF2163 0.84 -0.9 216,706 - GFF2163 0.84 -0.4 216,706 - GFF2163 0.84 -1.6 216,706 - GFF2163 0.84 +0.6 216,706 - GFF2163 0.84 +1.0 216,706 - GFF2163 0.84 +2.6 216,706 - GFF2163 0.84 -0.8 216,706 - GFF2163 0.84 -2.6 216,706 - GFF2163 0.84 -1.5 216,706 - GFF2163 0.84 -2.4 216,706 - GFF2163 0.84 -1.8 216,706 - GFF2163 0.84 -0.5 216,724 - GFF2163 0.85 +1.4 216,724 - GFF2163 0.85 +1.3 216,831 + +1.1 216,831 + -0.6 216,832 - -1.1 216,832 - -3.2 216,832 - +0.1 216,832 - -2.3 216,832 - +0.4 216,832 - +0.0 216,832 - -2.3 216,832 - -0.1 216,925 + +1.2 216,926 - +0.3 217,012 + -1.5 217,013 - -0.2 217,033 + -3.5 217,034 - +0.1 217,275 - GFF2164 0.28 +0.1 217,394 + GFF2164 0.42 -1.7 217,394 + GFF2164 0.42 -1.6 217,394 + GFF2164 0.42 -1.1 217,395 - GFF2164 0.42 -3.2 217,395 - GFF2164 0.42 -1.1 217,424 + GFF2164 0.45 -1.4 217,424 + GFF2164 0.45 -0.9 217,425 - GFF2164 0.45 -0.2 217,425 - GFF2164 0.45 -4.1 217,425 - GFF2164 0.45 -1.5 217,425 - GFF2164 0.45 -2.3 217,425 - GFF2164 0.45 -2.0 217,425 - GFF2164 0.45 -0.6 217,646 + GFF2164 0.72 +0.1 217,700 + GFF2164 0.78 -2.1 217,700 + GFF2164 0.78 -3.5 217,701 - GFF2164 0.78 +1.1 217,701 - GFF2164 0.78 -0.8 217,701 - GFF2164 0.78 -1.2 217,701 - GFF2164 0.78 -1.6 217,876 + -1.4 217,876 + -1.1 217,876 + +0.1 217,876 + -3.7 217,876 + +1.8 217,876 + -1.1 217,876 + -1.4 217,876 + -3.3 217,876 + -2.6 217,876 + -1.9 217,876 + +0.0 217,876 + -0.5 217,876 + -0.5 217,876 + -1.0 217,877 - +1.1 217,877 - +1.1 217,877 - -0.9 217,877 - +0.2 217,877 - -1.4 217,877 - -2.5 217,877 - +0.8 217,877 - -0.7 217,877 - -3.8 217,877 - -0.9 217,877 - -0.0 217,877 - +0.3 217,877 - +0.7 217,877 - +1.6 217,877 - -2.3 217,878 + +2.5 217,878 + -1.8 217,878 + +0.3 217,878 + +0.1 217,878 + +0.5 217,878 + +0.6 217,878 + +0.7 217,878 + -2.9 217,879 - +0.1 217,879 - +0.3 217,879 - +0.1 217,879 - -0.2 217,879 - +1.3 217,879 - -1.6 217,879 - +1.1 217,879 - -0.8 217,879 - -3.6 217,975 + -0.4 217,976 - -2.4 217,976 - +2.5 217,976 - -2.0 217,992 + -2.2 217,992 + -0.5 217,992 + +0.5 217,992 + +1.1 217,992 + +0.5 217,992 + -1.1 217,992 + +1.6 217,993 - -1.0 217,993 - -4.2 217,993 - -2.1 217,993 - +0.7 217,999 + -0.3 217,999 + +0.2 218,000 - +0.2 218,000 - -1.4 218,250 + GFF2165 0.13 -1.7 218,250 + GFF2165 0.13 -2.7 218,250 + GFF2165 0.13 -0.4 218,250 + GFF2165 0.13 -2.2 218,250 + GFF2165 0.13 +0.9 218,250 + GFF2165 0.13 +1.1 218,251 - GFF2165 0.13 +0.3 218,251 - GFF2165 0.13 -3.3 218,251 - GFF2165 0.13 +1.1 218,251 - GFF2165 0.13 -2.4 218,251 - GFF2165 0.13 -1.2 218,251 - GFF2165 0.13 +2.1 218,251 - GFF2165 0.13 +1.7 218,385 + GFF2165 0.20 +2.3 218,385 + GFF2165 0.20 -2.4 218,385 + GFF2165 0.20 -1.0 218,385 + GFF2165 0.20 -0.2 218,583 + GFF2165 0.32 -2.9 218,583 + GFF2165 0.32 +0.3 218,583 + GFF2165 0.32 -2.8 218,583 + GFF2165 0.32 -1.6 218,583 + GFF2165 0.32 -1.1 218,584 - GFF2165 0.32 +0.1 218,584 - GFF2165 0.32 -1.8 218,584 - GFF2165 0.32 +2.3 218,584 - GFF2165 0.32 +0.5 218,749 - GFF2165 0.41 -2.9 218,794 + GFF2165 0.44 -2.4 218,794 + GFF2165 0.44 +1.1 218,794 + GFF2165 0.44 -1.5 218,794 + GFF2165 0.44 +0.1 218,795 - GFF2165 0.44 +0.9 218,845 - GFF2165 0.47 -1.1
Or see this region's nucleotide sequence