Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF210 and GFF211 are separated by 19 nucleotides GFF211 and GFF212 overlap by 1 nucleotides GFF212 and GFF213 are separated by 63 nucleotides GFF213 and GFF214 are separated by 99 nucleotides GFF214 and GFF215 are separated by 15 nucleotides
GFF210 - Putative transmembrane protein, at 237,140 to 237,673
GFF210
GFF211 - protein of unknown function UPF0125, at 237,693 to 238,028
GFF211
GFF212 - Ribosome association toxin RatA, at 238,028 to 238,474
GFF212
GFF213 - tmRNA-binding protein SmpB, at 238,538 to 239,014
GFF213
GFF214 - Putative transmembrane protein, at 239,114 to 239,494
GFF214
GFF215 - RNA polymerase sigma-54 factor RpoN, at 239,510 to 240,025
GFF215
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 237.671 kb on + strand at 237.671 kb on + strand at 237.671 kb on + strand at 237.671 kb on + strand at 237.671 kb on + strand at 237.672 kb on - strand at 237.672 kb on - strand at 237.672 kb on - strand at 237.672 kb on - strand at 237.672 kb on - strand at 237.672 kb on - strand at 237.698 kb on - strand at 237.698 kb on - strand at 237.746 kb on + strand, within GFF211 at 237.746 kb on + strand, within GFF211 at 237.747 kb on - strand, within GFF211 at 237.747 kb on - strand, within GFF211 at 237.747 kb on - strand, within GFF211 at 238.041 kb on + strand at 238.041 kb on + strand at 238.041 kb on + strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.144 kb on - strand, within GFF212 at 238.395 kb on + strand, within GFF212 at 238.395 kb on + strand, within GFF212 at 238.396 kb on - strand, within GFF212 at 238.396 kb on - strand, within GFF212 at 238.396 kb on - strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.440 kb on + strand at 238.474 kb on + strand at 238.474 kb on + strand at 238.474 kb on + strand at 238.504 kb on + strand at 238.504 kb on + strand at 238.504 kb on + strand at 238.504 kb on + strand at 238.504 kb on + strand at 238.504 kb on + strand at 238.505 kb on - strand at 238.505 kb on - strand at 238.505 kb on - strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.596 kb on - strand, within GFF213 at 238.596 kb on - strand, within GFF213 at 238.596 kb on - strand, within GFF213 at 238.601 kb on + strand, within GFF213 at 238.601 kb on + strand, within GFF213 at 238.601 kb on + strand, within GFF213 at 238.602 kb on - strand, within GFF213 at 238.602 kb on - strand, within GFF213 at 238.602 kb on - strand, within GFF213 at 238.694 kb on + strand, within GFF213 at 238.695 kb on - strand, within GFF213 at 238.856 kb on + strand, within GFF213 at 238.856 kb on + strand, within GFF213 at 238.856 kb on + strand, within GFF213 at 238.856 kb on + strand, within GFF213 at 239.039 kb on - strand at 239.039 kb on - strand at 239.039 kb on - strand at 239.243 kb on + strand, within GFF214 at 239.243 kb on + strand, within GFF214 at 239.243 kb on + strand, within GFF214 at 239.243 kb on + strand, within GFF214 at 239.243 kb on + strand, within GFF214 at 239.244 kb on - strand, within GFF214 at 239.244 kb on - strand, within GFF214 at 239.244 kb on - strand, within GFF214 at 239.244 kb on - strand, within GFF214 at 239.244 kb on - strand, within GFF214 at 239.414 kb on + strand, within GFF214 at 239.414 kb on + strand, within GFF214 at 239.414 kb on + strand, within GFF214 at 239.414 kb on + strand, within GFF214 at 239.415 kb on - strand, within GFF214 at 239.415 kb on - strand, within GFF214 at 239.417 kb on + strand, within GFF214 at 239.417 kb on + strand, within GFF214 at 239.417 kb on + strand, within GFF214 at 239.418 kb on - strand, within GFF214 at 239.418 kb on - strand, within GFF214 at 239.418 kb on - strand, within GFF214 at 239.418 kb on - strand, within GFF214 at 239.418 kb on - strand, within GFF214 at 239.418 kb on - strand, within GFF214 at 239.556 kb on - strand at 239.888 kb on + strand, within GFF215 at 239.888 kb on + strand, within GFF215 at 239.889 kb on - strand, within GFF215 at 239.889 kb on - strand, within GFF215 at 239.889 kb on - strand, within GFF215 at 239.889 kb on - strand, within GFF215
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 237,671 + +0.3 237,671 + +0.8 237,671 + -1.1 237,671 + -3.6 237,671 + -0.8 237,672 - +1.1 237,672 - +0.2 237,672 - +0.5 237,672 - -2.9 237,672 - -0.7 237,672 - +0.7 237,698 - -0.1 237,698 - +2.7 237,746 + GFF211 0.16 -1.6 237,746 + GFF211 0.16 -1.1 237,747 - GFF211 0.16 -0.3 237,747 - GFF211 0.16 +0.3 237,747 - GFF211 0.16 -1.1 238,041 + +2.0 238,041 + -1.4 238,041 + +0.7 238,042 - +0.6 238,042 - +0.6 238,042 - -2.1 238,042 - -0.5 238,042 - -2.0 238,042 - +1.0 238,042 - +0.8 238,042 - +1.6 238,042 - +0.4 238,042 - +1.6 238,144 - GFF212 0.26 -1.8 238,395 + GFF212 0.82 -0.2 238,395 + GFF212 0.82 -1.5 238,396 - GFF212 0.82 +3.9 238,396 - GFF212 0.82 -1.2 238,396 - GFF212 0.82 -0.0 238,422 + GFF212 0.88 +0.6 238,422 + GFF212 0.88 +1.1 238,422 + GFF212 0.88 +1.0 238,422 + GFF212 0.88 +0.5 238,422 + GFF212 0.88 -2.8 238,422 + GFF212 0.88 -0.3 238,422 + GFF212 0.88 +1.2 238,422 + GFF212 0.88 -1.5 238,422 + GFF212 0.88 +2.6 238,422 + GFF212 0.88 -0.0 238,422 + GFF212 0.88 -1.0 238,422 + GFF212 0.88 -3.2 238,422 + GFF212 0.88 -1.0 238,422 + GFF212 0.88 +0.7 238,422 + GFF212 0.88 -1.9 238,422 + GFF212 0.88 -1.9 238,422 + GFF212 0.88 -2.7 238,422 + GFF212 0.88 -2.2 238,423 - GFF212 0.88 +0.3 238,423 - GFF212 0.88 +0.8 238,423 - GFF212 0.88 -2.6 238,423 - GFF212 0.88 +1.0 238,423 - GFF212 0.88 -0.3 238,423 - GFF212 0.88 -2.1 238,423 - GFF212 0.88 +0.4 238,423 - GFF212 0.88 -2.0 238,423 - GFF212 0.88 -1.2 238,423 - GFF212 0.88 -2.0 238,423 - GFF212 0.88 -2.1 238,423 - GFF212 0.88 -2.3 238,423 - GFF212 0.88 -2.8 238,423 - GFF212 0.88 -3.1 238,423 - GFF212 0.88 -0.2 238,423 - GFF212 0.88 -0.0 238,423 - GFF212 0.88 -1.6 238,423 - GFF212 0.88 +2.2 238,423 - GFF212 0.88 -2.2 238,440 + -0.1 238,474 + -2.3 238,474 + +1.2 238,474 + -1.0 238,504 + -2.2 238,504 + -0.9 238,504 + -1.2 238,504 + +0.4 238,504 + -1.2 238,504 + +0.6 238,505 - +1.0 238,505 - +1.2 238,505 - -0.8 238,558 + -2.6 238,558 + +0.6 238,558 + -0.8 238,558 + -1.6 238,558 + -0.8 238,558 + -1.2 238,558 + -2.8 238,558 + -0.3 238,558 + -0.4 238,559 - -0.4 238,559 - -2.4 238,559 - +0.6 238,559 - -3.1 238,559 - -2.9 238,559 - -2.4 238,559 - -2.0 238,559 - -2.4 238,596 - GFF213 0.12 -2.5 238,596 - GFF213 0.12 +0.6 238,596 - GFF213 0.12 -0.8 238,601 + GFF213 0.13 -0.4 238,601 + GFF213 0.13 -1.4 238,601 + GFF213 0.13 -2.7 238,602 - GFF213 0.13 -1.0 238,602 - GFF213 0.13 -0.8 238,602 - GFF213 0.13 +1.6 238,694 + GFF213 0.33 +0.6 238,695 - GFF213 0.33 -2.9 238,856 + GFF213 0.67 -1.9 238,856 + GFF213 0.67 -0.8 238,856 + GFF213 0.67 -1.2 238,856 + GFF213 0.67 -2.7 239,039 - -1.0 239,039 - +0.1 239,039 - -3.2 239,243 + GFF214 0.34 -1.9 239,243 + GFF214 0.34 +0.1 239,243 + GFF214 0.34 -1.1 239,243 + GFF214 0.34 +0.7 239,243 + GFF214 0.34 -3.1 239,244 - GFF214 0.34 +1.1 239,244 - GFF214 0.34 -0.4 239,244 - GFF214 0.34 +3.9 239,244 - GFF214 0.34 +1.6 239,244 - GFF214 0.34 +1.9 239,414 + GFF214 0.79 -1.8 239,414 + GFF214 0.79 -1.6 239,414 + GFF214 0.79 -2.7 239,414 + GFF214 0.79 +3.2 239,415 - GFF214 0.79 +0.6 239,415 - GFF214 0.79 +1.1 239,417 + GFF214 0.80 +2.7 239,417 + GFF214 0.80 +0.3 239,417 + GFF214 0.80 +0.6 239,418 - GFF214 0.80 -2.0 239,418 - GFF214 0.80 +0.1 239,418 - GFF214 0.80 +0.6 239,418 - GFF214 0.80 -0.4 239,418 - GFF214 0.80 -1.9 239,418 - GFF214 0.80 +1.1 239,556 - -2.1 239,888 + GFF215 0.73 -0.4 239,888 + GFF215 0.73 -1.8 239,889 - GFF215 0.73 +0.3 239,889 - GFF215 0.73 -1.4 239,889 - GFF215 0.73 -0.0 239,889 - GFF215 0.73 -2.7
Or see this region's nucleotide sequence