Strain Fitness in Variovorax sp. SCN45 around GFF2128

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2127 and GFF2128 are separated by 30 nucleotidesGFF2128 and GFF2129 are separated by 96 nucleotidesGFF2129 and GFF2130 are separated by 61 nucleotides GFF2127 - Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly, at 176,335 to 177,612 GFF2127 GFF2128 - Enoyl-CoA hydratase (EC 4.2.1.17), at 177,643 to 178,422 GFF2128 GFF2129 - small multidrug resistance family (SMR) protein, at 178,519 to 178,854 GFF2129 GFF2130 - hypothetical protein, at 178,916 to 179,506 GFF2130 Position (kb) 177 178 179Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 176.783 kb on + strand, within GFF2127at 176.926 kb on - strand, within GFF2127at 176.926 kb on - strand, within GFF2127at 176.926 kb on - strand, within GFF2127at 176.926 kb on - strand, within GFF2127at 177.062 kb on + strand, within GFF2127at 177.062 kb on + strand, within GFF2127at 177.063 kb on - strand, within GFF2127at 177.086 kb on - strand, within GFF2127at 177.086 kb on - strand, within GFF2127at 177.086 kb on - strand, within GFF2127at 177.086 kb on - strand, within GFF2127at 177.086 kb on - strand, within GFF2127at 177.196 kb on + strand, within GFF2127at 177.196 kb on + strand, within GFF2127at 177.473 kb on - strand, within GFF2127at 177.821 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.172 kb on + strand, within GFF2128at 178.184 kb on + strand, within GFF2128at 178.184 kb on + strand, within GFF2128at 178.184 kb on + strand, within GFF2128at 178.184 kb on + strand, within GFF2128at 178.184 kb on + strand, within GFF2128at 178.185 kb on - strand, within GFF2128at 178.185 kb on - strand, within GFF2128at 178.185 kb on - strand, within GFF2128at 178.185 kb on - strand, within GFF2128at 178.185 kb on - strand, within GFF2128at 178.202 kb on + strand, within GFF2128at 178.202 kb on + strand, within GFF2128at 178.202 kb on + strand, within GFF2128at 178.202 kb on + strand, within GFF2128at 178.202 kb on + strand, within GFF2128at 178.203 kb on - strand, within GFF2128at 178.203 kb on - strand, within GFF2128at 178.203 kb on - strand, within GFF2128at 178.203 kb on - strand, within GFF2128at 178.415 kb on + strandat 178.415 kb on + strandat 178.416 kb on - strandat 178.461 kb on - strandat 178.461 kb on - strandat 178.462 kb on + strandat 178.462 kb on + strandat 178.462 kb on + strandat 178.463 kb on - strandat 178.506 kb on + strandat 178.507 kb on - strandat 178.507 kb on - strandat 178.507 kb on - strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.532 kb on - strandat 178.537 kb on + strandat 178.537 kb on + strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.639 kb on + strand, within GFF2129at 178.640 kb on - strand, within GFF2129at 178.640 kb on - strand, within GFF2129at 178.699 kb on + strand, within GFF2129at 178.699 kb on + strand, within GFF2129at 178.946 kb on + strandat 178.946 kb on + strandat 178.946 kb on + strandat 178.947 kb on - strandat 178.947 kb on - strandat 178.947 kb on - strandat 178.947 kb on - strandat 178.947 kb on - strandat 179.282 kb on + strand, within GFF2130at 179.282 kb on + strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.396 kb on + strand, within GFF2130at 179.397 kb on - strand, within GFF2130

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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176,783 + GFF2127 0.35 +2.4
176,926 - GFF2127 0.46 -2.7
176,926 - GFF2127 0.46 -2.3
176,926 - GFF2127 0.46 -1.5
176,926 - GFF2127 0.46 +0.4
177,062 + GFF2127 0.57 -0.5
177,062 + GFF2127 0.57 +1.6
177,063 - GFF2127 0.57 +1.7
177,086 - GFF2127 0.59 -0.0
177,086 - GFF2127 0.59 +0.5
177,086 - GFF2127 0.59 +0.8
177,086 - GFF2127 0.59 -3.4
177,086 - GFF2127 0.59 -2.5
177,196 + GFF2127 0.67 -1.3
177,196 + GFF2127 0.67 -0.2
177,473 - GFF2127 0.89 +0.4
177,821 + GFF2128 0.23 +1.1
178,172 + GFF2128 0.68 -2.6
178,172 + GFF2128 0.68 -1.2
178,172 + GFF2128 0.68 +0.1
178,172 + GFF2128 0.68 -5.2
178,172 + GFF2128 0.68 -0.7
178,172 + GFF2128 0.68 -2.8
178,172 + GFF2128 0.68 -4.2
178,184 + GFF2128 0.69 -2.4
178,184 + GFF2128 0.69 -4.9
178,184 + GFF2128 0.69 +0.1
178,184 + GFF2128 0.69 +1.1
178,184 + GFF2128 0.69 -3.5
178,185 - GFF2128 0.69 -3.0
178,185 - GFF2128 0.69 -1.7
178,185 - GFF2128 0.69 -3.3
178,185 - GFF2128 0.69 -2.3
178,185 - GFF2128 0.69 -0.5
178,202 + GFF2128 0.72 -3.6
178,202 + GFF2128 0.72 -4.1
178,202 + GFF2128 0.72 -1.3
178,202 + GFF2128 0.72 -2.5
178,202 + GFF2128 0.72 -3.3
178,203 - GFF2128 0.72 -3.6
178,203 - GFF2128 0.72 -3.7
178,203 - GFF2128 0.72 -5.0
178,203 - GFF2128 0.72 -3.2
178,415 + -1.0
178,415 + -2.9
178,416 - -3.0
178,461 - +2.6
178,461 - -0.2
178,462 + +0.1
178,462 + -0.9
178,462 + +1.3
178,463 - -2.6
178,506 + -0.5
178,507 - -1.4
178,507 - +0.2
178,507 - +0.8
178,531 + -2.7
178,531 + -1.0
178,531 + +0.9
178,531 + +0.5
178,531 + +0.1
178,531 + -1.9
178,531 + +2.3
178,531 + -2.3
178,531 + +2.0
178,532 - +0.0
178,537 + -1.5
178,537 + +0.5
178,538 - -1.4
178,538 - +1.2
178,538 - +0.5
178,538 - -1.8
178,538 - +0.5
178,639 + GFF2129 0.36 +0.3
178,640 - GFF2129 0.36 -2.8
178,640 - GFF2129 0.36 +1.4
178,699 + GFF2129 0.54 -0.7
178,699 + GFF2129 0.54 -3.1
178,946 + +1.4
178,946 + -0.2
178,946 + -1.0
178,947 - +0.8
178,947 - -3.0
178,947 - +1.0
178,947 - +0.1
178,947 - +1.5
179,282 + GFF2130 0.62 +1.6
179,282 + GFF2130 0.62 +1.1
179,283 - GFF2130 0.62 -1.7
179,283 - GFF2130 0.62 +2.7
179,283 - GFF2130 0.62 -2.4
179,283 - GFF2130 0.62 -2.3
179,283 - GFF2130 0.62 +0.5
179,283 - GFF2130 0.62 +1.0
179,396 + GFF2130 0.81 +0.1
179,397 - GFF2130 0.81 +0.2

Or see this region's nucleotide sequence