Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2109 and GFF2110 are separated by 56 nucleotides GFF2110 and GFF2111 are separated by 55 nucleotides GFF2111 and GFF2112 are separated by 36 nucleotides GFF2112 and GFF2113 are separated by 37 nucleotides
GFF2109 - FIG00454067: hypothetical protein, at 159,145 to 159,390
GFF2109
GFF2110 - no description, at 159,447 to 160,289
GFF2110
GFF2111 - Permease of the drug/metabolite transporter (DMT) superfamily, at 160,345 to 161,250
GFF2111
GFF2112 - no description, at 161,287 to 162,063
GFF2112
GFF2113 - NADH dehydrogenase (EC 1.6.99.3), at 162,101 to 162,772
GFF2113
Position (kb) 160
161
162 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 159.374 kb on + strand at 159.375 kb on - strand at 159.376 kb on - strand at 159.460 kb on + strand at 159.460 kb on + strand at 159.461 kb on - strand at 159.498 kb on + strand at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.536 kb on + strand, within GFF2110 at 159.536 kb on - strand, within GFF2110 at 159.542 kb on - strand, within GFF2110 at 159.607 kb on + strand, within GFF2110 at 159.629 kb on - strand, within GFF2110 at 159.779 kb on - strand, within GFF2110 at 159.779 kb on - strand, within GFF2110 at 159.965 kb on - strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.058 kb on - strand, within GFF2110 at 160.058 kb on - strand, within GFF2110 at 160.058 kb on - strand, within GFF2110 at 160.553 kb on + strand, within GFF2111 at 160.554 kb on - strand, within GFF2111 at 160.720 kb on - strand, within GFF2111 at 160.899 kb on + strand, within GFF2111 at 160.900 kb on - strand, within GFF2111 at 161.400 kb on + strand, within GFF2112 at 161.729 kb on + strand, within GFF2112 at 161.729 kb on + strand, within GFF2112 at 161.846 kb on + strand, within GFF2112 at 161.970 kb on - strand, within GFF2112
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 159,374 + -0.8 159,375 - +1.2 159,376 - +2.9 159,460 + +0.9 159,460 + +1.0 159,461 - +0.1 159,498 + -1.2 159,535 + GFF2110 0.10 +0.2 159,535 + GFF2110 0.10 -2.3 159,535 + GFF2110 0.10 +2.1 159,535 + GFF2110 0.10 -2.4 159,535 + GFF2110 0.10 +2.3 159,536 + GFF2110 0.11 -2.9 159,536 - GFF2110 0.11 -0.5 159,542 - GFF2110 0.11 -1.2 159,607 + GFF2110 0.19 -3.5 159,629 - GFF2110 0.22 +0.2 159,779 - GFF2110 0.39 -1.2 159,779 - GFF2110 0.39 -0.6 159,965 - GFF2110 0.61 -2.1 160,057 + GFF2110 0.72 +0.6 160,057 + GFF2110 0.72 +0.4 160,057 + GFF2110 0.72 -4.1 160,058 - GFF2110 0.72 -0.2 160,058 - GFF2110 0.72 -1.9 160,058 - GFF2110 0.72 +0.6 160,553 + GFF2111 0.23 +0.5 160,554 - GFF2111 0.23 -1.3 160,720 - GFF2111 0.41 -4.3 160,899 + GFF2111 0.61 -0.5 160,900 - GFF2111 0.61 -1.8 161,400 + GFF2112 0.15 -2.5 161,729 + GFF2112 0.57 -1.7 161,729 + GFF2112 0.57 -2.1 161,846 + GFF2112 0.72 -1.6 161,970 - GFF2112 0.88 -1.0
Or see this region's nucleotide sequence