Strain Fitness in Variovorax sp. SCN45 around GFF2077

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
122,532	+		GFF2076	0.27	+1.1
122,532	+		GFF2076	0.27	+0.3
122,532	+		GFF2076	0.27	-0.7
122,532	+		GFF2076	0.27	-0.3
122,533	-		GFF2076	0.27	+0.8
122,533	-		GFF2076	0.27	-0.8
122,533	-		GFF2076	0.27	-1.8
122,550	+		GFF2076	0.29	+0.6
122,550	+		GFF2076	0.29	+1.1
122,550	+		GFF2076	0.29	-2.3
122,565	+		GFF2076	0.30	-1.8
122,566	-		GFF2076	0.30	+1.6
122,971	+		GFF2076	0.62	-1.4
122,972	+		GFF2076	0.62	+1.0
122,973	-		GFF2076	0.62	+1.4
122,973	-		GFF2076	0.62	-3.0
122,973	-		GFF2076	0.62	-0.5
123,198	+		GFF2076	0.80	-0.2
123,198	+		GFF2076	0.80	+0.9
123,198	+		GFF2076	0.80	-0.2
123,199	-		GFF2076	0.80	+1.0
123,199	-		GFF2076	0.80	-0.7
123,199	-		GFF2076	0.80	+1.1
123,219	+		GFF2076	0.81	+0.9
123,220	-		GFF2076	0.81	+3.5
123,220	-		GFF2076	0.81	+0.5
123,220	-		GFF2076	0.81	-0.2
123,220	-		GFF2076	0.81	+0.3
123,220	-		GFF2076	0.81	-2.1
123,527	+				-0.4
123,527	+				-2.5
123,545	+				-0.2
123,545	+				+4.1
123,547	+				+2.9
123,617	+		GFF2077	0.12	-2.3
123,617	+		GFF2077	0.12	-4.8
123,617	+		GFF2077	0.12	-0.5
123,617	+		GFF2077	0.12	+0.6
123,617	+		GFF2077	0.12	-0.1
123,617	+		GFF2077	0.12	-0.9
123,618	-		GFF2077	0.12	-1.2
123,677	+		GFF2077	0.17	-0.0
123,677	+		GFF2077	0.17	+1.9
123,707	+		GFF2077	0.19	+0.6
123,707	+		GFF2077	0.19	+0.1
123,707	+		GFF2077	0.19	+0.9
123,707	+		GFF2077	0.19	+0.2
123,707	+		GFF2077	0.19	-3.7
123,707	+		GFF2077	0.19	-0.1
123,708	-		GFF2077	0.19	-3.2
123,708	-		GFF2077	0.19	-0.2
123,722	+		GFF2077	0.20	-0.5
123,722	+		GFF2077	0.20	+0.1
123,722	+		GFF2077	0.20	-2.5
123,722	+		GFF2077	0.20	-3.3
123,722	+		GFF2077	0.20	-4.0
123,723	-		GFF2077	0.20	-3.1
123,723	-		GFF2077	0.20	+0.4
123,723	-		GFF2077	0.20	+0.4
123,723	-		GFF2077	0.20	+0.6
123,723	-		GFF2077	0.20	-1.1
123,723	-		GFF2077	0.20	+2.6
123,723	-		GFF2077	0.20	+2.1
123,785	+		GFF2077	0.25	-0.3
123,785	+		GFF2077	0.25	+0.1
123,785	+		GFF2077	0.25	-1.1
123,785	+		GFF2077	0.25	-1.3
123,786	-		GFF2077	0.25	+2.6
123,872	+		GFF2077	0.31	+0.1
123,872	+		GFF2077	0.31	+2.3
123,873	-		GFF2077	0.31	-1.9
123,873	-		GFF2077	0.31	-0.8
124,469	+		GFF2077	0.76	-0.2
124,469	+		GFF2077	0.76	-1.0
124,470	-		GFF2077	0.76	-1.3
124,470	-		GFF2077	0.76	-0.4
124,470	-		GFF2077	0.76	-2.2
124,470	-		GFF2077	0.76	+0.6
124,493	+		GFF2077	0.77	-1.3
124,493	+		GFF2077	0.77	-0.6
124,494	-		GFF2077	0.78	+0.2
124,494	-		GFF2077	0.78	-1.6
124,494	-		GFF2077	0.78	-4.0
124,494	-		GFF2077	0.78	-0.1
124,494	-		GFF2077	0.78	-1.9
124,494	-		GFF2077	0.78	-3.6
124,494	-		GFF2077	0.78	-2.4
124,494	-		GFF2077	0.78	-2.3
124,496	+		GFF2077	0.78	-0.5
124,497	-		GFF2077	0.78	+1.1
124,497	-		GFF2077	0.78	+0.2
124,565	+		GFF2077	0.83	-3.5
124,565	+		GFF2077	0.83	-2.8
124,566	-		GFF2077	0.83	-2.0
124,566	-		GFF2077	0.83	-2.9
124,566	-		GFF2077	0.83	+0.6
124,566	-		GFF2077	0.83	-0.2
124,739	+				+0.7
124,739	+				-0.7
124,740	-				+2.1
124,740	-				-0.9
124,740	-				-1.6
124,740	-				-1.4
124,859	+				+0.6
124,859	+				+2.1
124,859	+				-2.4
124,859	+				-0.9
124,859	+				-2.4
124,859	+				-0.2
124,859	+				-0.4
124,859	+				+0.2
124,860	-				+0.9
124,860	-				-1.0
124,877	+				-2.4
124,877	+				-0.2
124,878	-				-1.2
125,021	+		GFF2078	0.16	-1.8
125,021	+		GFF2078	0.16	-0.2
125,042	+		GFF2078	0.18	-0.1
125,159	+		GFF2078	0.26	-1.3
125,159	+		GFF2078	0.26	+1.1
125,159	+		GFF2078	0.26	+0.1
125,159	+		GFF2078	0.26	+1.8
125,160	-		GFF2078	0.26	-2.0
125,160	-		GFF2078	0.26	-2.3
125,161	+		GFF2078	0.26	-0.7
125,162	-		GFF2078	0.26	-1.9
125,199	-		GFF2078	0.29	+1.0