Strain Fitness in Variovorax sp. SCN45 around GFF20

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF18 and GFF19 are separated by 155 nucleotidesGFF19 and GFF20 are separated by 33 nucleotidesGFF20 and GFF21 overlap by 4 nucleotides GFF18 - hypothetical protein, at 19,890 to 21,170 GFF18 GFF19 - FIG01219766: hypothetical protein, at 21,326 to 21,712 GFF19 GFF20 - hypothetical protein, at 21,746 to 22,498 GFF20 GFF21 - no description, at 22,495 to 23,631 GFF21 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1at 21.273 kb on + strandat 21.273 kb on + strandat 21.274 kb on - strandat 21.274 kb on - strandat 21.293 kb on + strandat 21.294 kb on - strandat 21.994 kb on - strand, within GFF20at 22.200 kb on + strand, within GFF20at 22.201 kb on - strand, within GFF20at 22.755 kb on - strand, within GFF21at 22.755 kb on - strand, within GFF21

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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21,273 + +0.2
21,273 + -0.5
21,274 - -2.2
21,274 - -2.3
21,293 + -0.8
21,294 - -0.2
21,994 - GFF20 0.33 -2.7
22,200 + GFF20 0.60 -2.3
22,201 - GFF20 0.60 -1.5
22,755 - GFF21 0.23 -2.3
22,755 - GFF21 0.23 -0.8

Or see this region's nucleotide sequence