Strain Fitness in Variovorax sp. SCN45 around GFF1992

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1990 and GFF1991 are separated by 30 nucleotidesGFF1991 and GFF1992 are separated by 40 nucleotidesGFF1992 and GFF1993 are separated by 59 nucleotides GFF1990 - Transcriptional regulator, MerR family, at 32,063 to 32,458 GFF1990 GFF1991 - Carbonic anhydrase, beta class (EC 4.2.1.1), at 32,489 to 33,229 GFF1991 GFF1992 - Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-), at 33,270 to 35,090 GFF1992 GFF1993 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 35,150 to 36,334 GFF1993 Position (kb) 33 34 35 36Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.352 kb on + strand, within GFF1990at 32.352 kb on + strand, within GFF1990at 32.352 kb on + strand, within GFF1990at 32.353 kb on - strand, within GFF1990at 32.353 kb on - strand, within GFF1990at 32.480 kb on + strandat 32.480 kb on + strandat 32.480 kb on + strandat 32.488 kb on + strandat 32.488 kb on + strandat 33.303 kb on + strandat 33.303 kb on + strandat 33.303 kb on + strandat 33.304 kb on - strandat 33.304 kb on - strandat 33.444 kb on + strandat 33.444 kb on + strandat 33.444 kb on + strandat 33.445 kb on - strandat 33.445 kb on - strandat 33.540 kb on + strand, within GFF1992at 33.540 kb on + strand, within GFF1992at 33.540 kb on + strand, within GFF1992at 33.540 kb on + strand, within GFF1992at 33.541 kb on - strand, within GFF1992at 33.541 kb on - strand, within GFF1992at 33.541 kb on - strand, within GFF1992at 33.541 kb on - strand, within GFF1992at 33.541 kb on - strand, within GFF1992at 33.627 kb on + strand, within GFF1992at 33.628 kb on - strand, within GFF1992at 33.628 kb on - strand, within GFF1992at 33.675 kb on + strand, within GFF1992at 33.675 kb on + strand, within GFF1992at 33.675 kb on + strand, within GFF1992at 33.675 kb on + strand, within GFF1992at 33.676 kb on - strand, within GFF1992at 33.676 kb on - strand, within GFF1992at 33.676 kb on - strand, within GFF1992at 33.702 kb on + strand, within GFF1992at 33.702 kb on + strand, within GFF1992at 33.703 kb on - strand, within GFF1992at 33.703 kb on - strand, within GFF1992at 33.703 kb on - strand, within GFF1992at 33.711 kb on + strand, within GFF1992at 33.711 kb on + strand, within GFF1992at 33.712 kb on - strand, within GFF1992at 33.712 kb on - strand, within GFF1992at 33.714 kb on + strand, within GFF1992at 33.715 kb on - strand, within GFF1992at 33.715 kb on - strand, within GFF1992at 33.715 kb on - strand, within GFF1992at 33.715 kb on - strand, within GFF1992at 33.912 kb on + strand, within GFF1992at 33.912 kb on + strand, within GFF1992at 33.913 kb on - strand, within GFF1992at 33.913 kb on - strand, within GFF1992at 33.913 kb on - strand, within GFF1992at 33.967 kb on + strand, within GFF1992at 33.967 kb on + strand, within GFF1992at 33.967 kb on + strand, within GFF1992at 33.968 kb on - strand, within GFF1992at 33.993 kb on + strand, within GFF1992at 33.993 kb on + strand, within GFF1992at 33.993 kb on + strand, within GFF1992at 34.056 kb on + strand, within GFF1992at 34.056 kb on + strand, within GFF1992at 34.057 kb on - strand, within GFF1992at 34.057 kb on - strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.141 kb on - strand, within GFF1992at 34.182 kb on + strand, within GFF1992at 34.209 kb on + strand, within GFF1992at 34.314 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.548 kb on + strand, within GFF1992at 34.548 kb on + strand, within GFF1992at 34.549 kb on - strand, within GFF1992at 34.581 kb on + strand, within GFF1992at 34.581 kb on + strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.674 kb on + strand, within GFF1992at 34.674 kb on + strand, within GFF1992at 34.675 kb on - strand, within GFF1992at 34.675 kb on - strand, within GFF1992at 34.773 kb on + strand, within GFF1992at 34.773 kb on + strand, within GFF1992at 34.774 kb on - strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.795 kb on - strand, within GFF1992at 34.795 kb on - strand, within GFF1992at 34.795 kb on - strand, within GFF1992at 34.869 kb on + strand, within GFF1992at 34.869 kb on + strand, within GFF1992at 34.869 kb on + strand, within GFF1992at 34.870 kb on - strand, within GFF1992at 35.363 kb on + strand, within GFF1993at 35.363 kb on + strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.519 kb on + strand, within GFF1993at 35.520 kb on - strand, within GFF1993at 35.606 kb on + strand, within GFF1993at 35.607 kb on - strand, within GFF1993at 35.657 kb on + strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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32,279 + GFF1990 0.55 +0.9
32,279 + GFF1990 0.55 -3.3
32,279 + GFF1990 0.55 -1.6
32,279 + GFF1990 0.55 +0.7
32,279 + GFF1990 0.55 -0.8
32,279 + GFF1990 0.55 +1.8
32,280 - GFF1990 0.55 +1.0
32,280 - GFF1990 0.55 +1.1
32,280 - GFF1990 0.55 +1.9
32,280 - GFF1990 0.55 -1.6
32,280 - GFF1990 0.55 -0.4
32,280 - GFF1990 0.55 +1.7
32,280 - GFF1990 0.55 +0.2
32,280 - GFF1990 0.55 +0.1
32,280 - GFF1990 0.55 +0.4
32,280 - GFF1990 0.55 -0.4
32,280 - GFF1990 0.55 -0.1
32,280 - GFF1990 0.55 -1.2
32,280 - GFF1990 0.55 -0.8
32,352 + GFF1990 0.73 -3.3
32,352 + GFF1990 0.73 -0.9
32,352 + GFF1990 0.73 -0.6
32,353 - GFF1990 0.73 -0.6
32,353 - GFF1990 0.73 +1.0
32,480 + +2.1
32,480 + +0.6
32,480 + +2.6
32,488 + -1.6
32,488 + -0.9
33,303 + -0.8
33,303 + -1.0
33,303 + +3.0
33,304 - -2.2
33,304 - -0.7
33,444 + -0.3
33,444 + -0.8
33,444 + -0.9
33,445 - -1.0
33,445 - +1.4
33,540 + GFF1992 0.15 +0.1
33,540 + GFF1992 0.15 -0.5
33,540 + GFF1992 0.15 -2.4
33,540 + GFF1992 0.15 -2.0
33,541 - GFF1992 0.15 -1.4
33,541 - GFF1992 0.15 +2.1
33,541 - GFF1992 0.15 +0.9
33,541 - GFF1992 0.15 -1.5
33,541 - GFF1992 0.15 -2.2
33,627 + GFF1992 0.20 +1.0
33,628 - GFF1992 0.20 -2.2
33,628 - GFF1992 0.20 -0.7
33,675 + GFF1992 0.22 +0.9
33,675 + GFF1992 0.22 -3.8
33,675 + GFF1992 0.22 -2.8
33,675 + GFF1992 0.22 -3.6
33,676 - GFF1992 0.22 -2.3
33,676 - GFF1992 0.22 -0.9
33,676 - GFF1992 0.22 -2.9
33,702 + GFF1992 0.24 +0.1
33,702 + GFF1992 0.24 -0.4
33,703 - GFF1992 0.24 -1.3
33,703 - GFF1992 0.24 -1.4
33,703 - GFF1992 0.24 -3.1
33,711 + GFF1992 0.24 -1.2
33,711 + GFF1992 0.24 +0.5
33,712 - GFF1992 0.24 -1.0
33,712 - GFF1992 0.24 +1.5
33,714 + GFF1992 0.24 -0.4
33,715 - GFF1992 0.24 -1.1
33,715 - GFF1992 0.24 -0.0
33,715 - GFF1992 0.24 +0.3
33,715 - GFF1992 0.24 +0.5
33,912 + GFF1992 0.35 -1.9
33,912 + GFF1992 0.35 +1.7
33,913 - GFF1992 0.35 -0.9
33,913 - GFF1992 0.35 -1.4
33,913 - GFF1992 0.35 -0.7
33,967 + GFF1992 0.38 +2.1
33,967 + GFF1992 0.38 -0.4
33,967 + GFF1992 0.38 -0.2
33,968 - GFF1992 0.38 -0.2
33,993 + GFF1992 0.40 -0.2
33,993 + GFF1992 0.40 -0.1
33,993 + GFF1992 0.40 -2.3
34,056 + GFF1992 0.43 -4.0
34,056 + GFF1992 0.43 -2.2
34,057 - GFF1992 0.43 -1.0
34,057 - GFF1992 0.43 +2.9
34,140 + GFF1992 0.48 +0.6
34,140 + GFF1992 0.48 +2.1
34,140 + GFF1992 0.48 -0.4
34,140 + GFF1992 0.48 -0.4
34,140 + GFF1992 0.48 -0.4
34,140 + GFF1992 0.48 -2.3
34,141 - GFF1992 0.48 -0.2
34,182 + GFF1992 0.50 +1.4
34,209 + GFF1992 0.52 +1.0
34,314 + GFF1992 0.57 +0.6
34,359 + GFF1992 0.60 +0.8
34,359 + GFF1992 0.60 -1.6
34,359 + GFF1992 0.60 -3.0
34,359 + GFF1992 0.60 -0.3
34,359 + GFF1992 0.60 -0.7
34,359 + GFF1992 0.60 -3.1
34,359 + GFF1992 0.60 +0.3
34,359 + GFF1992 0.60 +1.1
34,359 + GFF1992 0.60 -1.6
34,359 + GFF1992 0.60 -0.4
34,359 + GFF1992 0.60 -1.6
34,359 + GFF1992 0.60 -0.5
34,360 - GFF1992 0.60 -2.7
34,360 - GFF1992 0.60 -1.2
34,360 - GFF1992 0.60 -1.9
34,360 - GFF1992 0.60 -1.2
34,360 - GFF1992 0.60 -0.9
34,360 - GFF1992 0.60 -0.8
34,360 - GFF1992 0.60 +0.6
34,360 - GFF1992 0.60 -1.2
34,360 - GFF1992 0.60 -2.1
34,548 + GFF1992 0.70 +1.4
34,548 + GFF1992 0.70 -1.6
34,549 - GFF1992 0.70 -1.3
34,581 + GFF1992 0.72 -0.2
34,581 + GFF1992 0.72 -1.0
34,582 - GFF1992 0.72 +0.1
34,582 - GFF1992 0.72 -1.6
34,582 - GFF1992 0.72 -0.6
34,582 - GFF1992 0.72 +0.1
34,674 + GFF1992 0.77 -2.5
34,674 + GFF1992 0.77 -3.5
34,675 - GFF1992 0.77 -0.7
34,675 - GFF1992 0.77 -1.3
34,773 + GFF1992 0.83 +0.1
34,773 + GFF1992 0.83 +1.6
34,774 - GFF1992 0.83 +0.1
34,794 + GFF1992 0.84 +1.4
34,794 + GFF1992 0.84 -2.7
34,794 + GFF1992 0.84 +0.9
34,794 + GFF1992 0.84 +0.2
34,795 - GFF1992 0.84 -1.4
34,795 - GFF1992 0.84 -1.1
34,795 - GFF1992 0.84 +1.7
34,869 + GFF1992 0.88 +3.4
34,869 + GFF1992 0.88 -1.7
34,869 + GFF1992 0.88 -0.3
34,870 - GFF1992 0.88 -1.4
35,363 + GFF1993 0.18 -0.7
35,363 + GFF1993 0.18 +1.5
35,364 - GFF1993 0.18 +0.8
35,364 - GFF1993 0.18 -4.1
35,364 - GFF1993 0.18 -1.4
35,364 - GFF1993 0.18 -1.3
35,519 + GFF1993 0.31 -1.0
35,520 - GFF1993 0.31 -1.0
35,606 + GFF1993 0.38 -3.1
35,607 - GFF1993 0.39 -1.8
35,657 + GFF1993 0.43 -2.0
35,658 - GFF1993 0.43 -2.8
35,658 - GFF1993 0.43 -0.7
35,658 - GFF1993 0.43 -0.5
35,658 - GFF1993 0.43 -0.9
35,658 - GFF1993 0.43 -0.7
35,658 - GFF1993 0.43 +0.1

Or see this region's nucleotide sequence