Strain Fitness in Variovorax sp. SCN45 around GFF1829

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
494,171	+		GFF1828	0.54	+1.6
494,172	-		GFF1828	0.54	-2.4
494,172	-		GFF1828	0.54	-1.6
494,277	-		GFF1828	0.60	+0.6
494,285	+		GFF1828	0.60	-2.1
494,286	-		GFF1828	0.60	+0.5
494,318	+		GFF1828	0.62	+0.3
494,319	-		GFF1828	0.62	+1.1
494,319	-		GFF1828	0.62	-0.3
494,417	+		GFF1828	0.67	-1.3
494,418	-		GFF1828	0.68	-1.1
494,418	-		GFF1828	0.68	+0.9
494,847	-				-1.4
494,904	+				-0.5
494,905	-				-0.9
494,979	-				-0.8
494,979	-				-2.5
495,256	-		GFF1829	0.30	+1.0
495,322	-		GFF1829	0.45	-4.4
495,869	+		GFF1830	0.24	+1.3
496,286	+		GFF1830	0.56	+2.4