Strain Fitness in Variovorax sp. SCN45 around GFF1820

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1819 and GFF1820 are separated by 215 nucleotidesGFF1820 and GFF1821 are separated by 75 nucleotides GFF1819 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 482,435 to 483,244 GFF1819 GFF1820 - FIG137887: membrane protein related to purine degradation, at 483,460 to 484,671 GFF1820 GFF1821 - D-glycerate 2-kinase (EC 2.7.1.165), at 484,747 to 486,087 GFF1821 Position (kb) 483 484 485Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 482.720 kb on + strand, within GFF1819at 483.059 kb on + strand, within GFF1819at 483.059 kb on + strand, within GFF1819at 483.059 kb on + strand, within GFF1819at 483.059 kb on + strand, within GFF1819at 483.060 kb on - strand, within GFF1819at 483.060 kb on - strand, within GFF1819at 483.060 kb on - strand, within GFF1819at 483.060 kb on - strand, within GFF1819at 483.060 kb on - strand, within GFF1819at 483.060 kb on - strand, within GFF1819at 483.060 kb on - strand, within GFF1819at 483.383 kb on + strandat 483.383 kb on + strandat 483.469 kb on + strandat 483.469 kb on + strandat 483.469 kb on + strandat 483.469 kb on + strandat 483.469 kb on + strandat 483.469 kb on + strandat 483.469 kb on + strandat 483.470 kb on - strandat 483.470 kb on - strandat 483.470 kb on - strandat 483.470 kb on - strandat 483.472 kb on + strandat 483.472 kb on + strandat 483.472 kb on + strandat 483.473 kb on - strandat 483.547 kb on + strandat 483.548 kb on - strandat 483.649 kb on + strand, within GFF1820at 483.649 kb on + strand, within GFF1820at 483.649 kb on + strand, within GFF1820at 483.650 kb on - strand, within GFF1820at 483.650 kb on - strand, within GFF1820at 483.650 kb on - strand, within GFF1820at 483.664 kb on + strand, within GFF1820at 483.664 kb on + strand, within GFF1820at 483.664 kb on + strand, within GFF1820at 483.664 kb on + strand, within GFF1820at 483.664 kb on + strand, within GFF1820at 483.664 kb on + strand, within GFF1820at 483.664 kb on + strand, within GFF1820at 483.664 kb on + strand, within GFF1820at 483.665 kb on - strand, within GFF1820at 483.665 kb on - strand, within GFF1820at 483.709 kb on + strand, within GFF1820at 483.721 kb on + strand, within GFF1820at 483.721 kb on + strand, within GFF1820at 483.721 kb on + strand, within GFF1820at 483.721 kb on + strand, within GFF1820at 483.721 kb on + strand, within GFF1820at 483.721 kb on + strand, within GFF1820at 483.721 kb on + strand, within GFF1820at 483.721 kb on + strand, within GFF1820at 483.722 kb on - strand, within GFF1820at 483.722 kb on - strand, within GFF1820at 483.722 kb on - strand, within GFF1820at 483.735 kb on + strand, within GFF1820at 483.735 kb on + strand, within GFF1820at 483.763 kb on + strand, within GFF1820at 483.763 kb on + strand, within GFF1820at 483.763 kb on + strand, within GFF1820at 483.764 kb on - strand, within GFF1820at 483.764 kb on - strand, within GFF1820at 483.764 kb on - strand, within GFF1820at 483.764 kb on - strand, within GFF1820at 483.764 kb on - strand, within GFF1820at 483.784 kb on + strand, within GFF1820at 483.785 kb on - strand, within GFF1820at 483.785 kb on - strand, within GFF1820at 483.785 kb on - strand, within GFF1820at 483.871 kb on + strand, within GFF1820at 483.871 kb on + strand, within GFF1820at 483.872 kb on - strand, within GFF1820at 483.872 kb on - strand, within GFF1820at 483.872 kb on - strand, within GFF1820at 484.156 kb on + strand, within GFF1820at 484.156 kb on + strand, within GFF1820at 484.156 kb on + strand, within GFF1820at 484.156 kb on + strand, within GFF1820at 484.156 kb on + strand, within GFF1820at 484.156 kb on + strand, within GFF1820at 484.157 kb on - strand, within GFF1820at 484.157 kb on - strand, within GFF1820at 484.157 kb on - strand, within GFF1820at 484.199 kb on - strand, within GFF1820at 484.199 kb on - strand, within GFF1820at 484.199 kb on - strand, within GFF1820at 484.210 kb on + strand, within GFF1820at 484.211 kb on - strand, within GFF1820at 484.222 kb on + strand, within GFF1820at 484.222 kb on + strand, within GFF1820at 484.222 kb on + strand, within GFF1820at 484.222 kb on + strand, within GFF1820at 484.222 kb on + strand, within GFF1820at 484.223 kb on - strand, within GFF1820at 484.223 kb on - strand, within GFF1820at 484.223 kb on - strand, within GFF1820at 484.223 kb on - strand, within GFF1820at 484.223 kb on - strand, within GFF1820at 484.223 kb on - strand, within GFF1820at 484.223 kb on - strand, within GFF1820at 484.331 kb on - strand, within GFF1820at 484.331 kb on - strand, within GFF1820at 484.331 kb on - strand, within GFF1820at 484.555 kb on + strandat 484.555 kb on + strandat 484.555 kb on + strandat 484.556 kb on - strandat 484.669 kb on + strandat 484.669 kb on + strandat 484.669 kb on + strandat 484.669 kb on + strandat 484.670 kb on - strandat 484.823 kb on - strandat 484.999 kb on + strand, within GFF1821at 484.999 kb on + strand, within GFF1821at 485.000 kb on - strand, within GFF1821at 485.453 kb on - strand, within GFF1821at 485.453 kb on - strand, within GFF1821

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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482,720 + GFF1819 0.35 -0.8
483,059 + GFF1819 0.77 -1.8
483,059 + GFF1819 0.77 -1.7
483,059 + GFF1819 0.77 +1.2
483,059 + GFF1819 0.77 -1.0
483,060 - GFF1819 0.77 -3.5
483,060 - GFF1819 0.77 +2.0
483,060 - GFF1819 0.77 -1.1
483,060 - GFF1819 0.77 -0.8
483,060 - GFF1819 0.77 -0.3
483,060 - GFF1819 0.77 +3.8
483,060 - GFF1819 0.77 +0.6
483,383 + -0.5
483,383 + -3.4
483,469 + +0.1
483,469 + -1.6
483,469 + -3.3
483,469 + +0.4
483,469 + -0.7
483,469 + -0.6
483,469 + -3.8
483,470 - +1.4
483,470 - -1.6
483,470 - -3.4
483,470 - -0.4
483,472 + +1.4
483,472 + -0.2
483,472 + -3.0
483,473 - +1.6
483,547 + +0.0
483,548 - -0.5
483,649 + GFF1820 0.16 -2.1
483,649 + GFF1820 0.16 -1.8
483,649 + GFF1820 0.16 -0.7
483,650 - GFF1820 0.16 -2.1
483,650 - GFF1820 0.16 +0.1
483,650 - GFF1820 0.16 -1.8
483,664 + GFF1820 0.17 -0.4
483,664 + GFF1820 0.17 +0.0
483,664 + GFF1820 0.17 +0.1
483,664 + GFF1820 0.17 -0.6
483,664 + GFF1820 0.17 -0.3
483,664 + GFF1820 0.17 -0.3
483,664 + GFF1820 0.17 +0.6
483,664 + GFF1820 0.17 -1.4
483,665 - GFF1820 0.17 +0.4
483,665 - GFF1820 0.17 -1.1
483,709 + GFF1820 0.21 -2.3
483,721 + GFF1820 0.22 +2.5
483,721 + GFF1820 0.22 +0.1
483,721 + GFF1820 0.22 -0.6
483,721 + GFF1820 0.22 -0.2
483,721 + GFF1820 0.22 -2.9
483,721 + GFF1820 0.22 -0.8
483,721 + GFF1820 0.22 -0.3
483,721 + GFF1820 0.22 +0.4
483,722 - GFF1820 0.22 -1.9
483,722 - GFF1820 0.22 +1.2
483,722 - GFF1820 0.22 -1.8
483,735 + GFF1820 0.23 -2.4
483,735 + GFF1820 0.23 -1.4
483,763 + GFF1820 0.25 +0.0
483,763 + GFF1820 0.25 -1.7
483,763 + GFF1820 0.25 +0.1
483,764 - GFF1820 0.25 -0.9
483,764 - GFF1820 0.25 -0.4
483,764 - GFF1820 0.25 -2.1
483,764 - GFF1820 0.25 -3.0
483,764 - GFF1820 0.25 -0.6
483,784 + GFF1820 0.27 -1.7
483,785 - GFF1820 0.27 -1.7
483,785 - GFF1820 0.27 +1.2
483,785 - GFF1820 0.27 +1.0
483,871 + GFF1820 0.34 -1.0
483,871 + GFF1820 0.34 -0.4
483,872 - GFF1820 0.34 -1.4
483,872 - GFF1820 0.34 +1.2
483,872 - GFF1820 0.34 -0.2
484,156 + GFF1820 0.57 +2.0
484,156 + GFF1820 0.57 +0.5
484,156 + GFF1820 0.57 -2.2
484,156 + GFF1820 0.57 -3.2
484,156 + GFF1820 0.57 -1.3
484,156 + GFF1820 0.57 -3.1
484,157 - GFF1820 0.58 -1.8
484,157 - GFF1820 0.58 -2.5
484,157 - GFF1820 0.58 +2.2
484,199 - GFF1820 0.61 -2.2
484,199 - GFF1820 0.61 -0.8
484,199 - GFF1820 0.61 +0.3
484,210 + GFF1820 0.62 -0.6
484,211 - GFF1820 0.62 +0.5
484,222 + GFF1820 0.63 +0.1
484,222 + GFF1820 0.63 +1.3
484,222 + GFF1820 0.63 +0.3
484,222 + GFF1820 0.63 +1.0
484,222 + GFF1820 0.63 -0.6
484,223 - GFF1820 0.63 +0.8
484,223 - GFF1820 0.63 -1.0
484,223 - GFF1820 0.63 -0.8
484,223 - GFF1820 0.63 -2.2
484,223 - GFF1820 0.63 -0.8
484,223 - GFF1820 0.63 +1.5
484,223 - GFF1820 0.63 -1.0
484,331 - GFF1820 0.72 +2.3
484,331 - GFF1820 0.72 -1.2
484,331 - GFF1820 0.72 -2.2
484,555 + -2.6
484,555 + -1.2
484,555 + -1.6
484,556 - +0.0
484,669 + -1.0
484,669 + -0.2
484,669 + -2.6
484,669 + -0.5
484,670 - -1.1
484,823 - -2.8
484,999 + GFF1821 0.19 -0.7
484,999 + GFF1821 0.19 -0.3
485,000 - GFF1821 0.19 +0.7
485,453 - GFF1821 0.53 -1.1
485,453 - GFF1821 0.53 -1.6

Or see this region's nucleotide sequence