Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1765 and GFF1766 overlap by 14 nucleotides GFF1766 and GFF1767 are separated by 7 nucleotides GFF1767 and GFF1768 are separated by 14 nucleotides
GFF1765 - putative membrane protein, at 427,056 to 428,234
GFF1765
GFF1766 - no description, at 428,221 to 429,402
GFF1766
GFF1767 - no description, at 429,410 to 429,694
GFF1767
GFF1768 - FIG00729359: hypothetical protein, at 429,709 to 431,220
GFF1768
Position (kb) 428
429
430 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 427.888 kb on + strand, within GFF1765 at 427.888 kb on + strand, within GFF1765 at 428.128 kb on + strand at 428.129 kb on - strand at 428.630 kb on + strand, within GFF1766 at 428.631 kb on - strand, within GFF1766 at 428.639 kb on + strand, within GFF1766 at 428.639 kb on + strand, within GFF1766 at 428.640 kb on - strand, within GFF1766 at 428.654 kb on + strand, within GFF1766 at 428.655 kb on - strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.880 kb on - strand, within GFF1766 at 428.934 kb on - strand, within GFF1766 at 429.146 kb on + strand, within GFF1766 at 429.147 kb on - strand, within GFF1766 at 429.182 kb on + strand, within GFF1766 at 429.183 kb on - strand, within GFF1766 at 429.411 kb on + strand at 429.411 kb on + strand at 429.411 kb on + strand at 429.411 kb on + strand at 429.411 kb on + strand at 429.412 kb on - strand at 429.519 kb on + strand, within GFF1767 at 429.519 kb on + strand, within GFF1767 at 429.519 kb on + strand, within GFF1767 at 429.519 kb on + strand, within GFF1767 at 429.520 kb on - strand, within GFF1767 at 429.520 kb on - strand, within GFF1767 at 429.520 kb on - strand, within GFF1767 at 429.537 kb on + strand, within GFF1767 at 429.537 kb on + strand, within GFF1767 at 429.538 kb on - strand, within GFF1767 at 429.538 kb on - strand, within GFF1767 at 429.538 kb on - strand, within GFF1767 at 429.598 kb on + strand, within GFF1767 at 429.600 kb on + strand, within GFF1767 at 429.600 kb on + strand, within GFF1767 at 429.600 kb on + strand, within GFF1767 at 429.601 kb on - strand, within GFF1767 at 429.758 kb on + strand at 430.034 kb on - strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.188 kb on - strand, within GFF1768 at 430.188 kb on - strand, within GFF1768 at 430.188 kb on - strand, within GFF1768 at 430.188 kb on - strand, within GFF1768 at 430.188 kb on - strand, within GFF1768 at 430.188 kb on - strand, within GFF1768
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 427,888 + GFF1765 0.71 +0.9 427,888 + GFF1765 0.71 -2.0 428,128 + -0.9 428,129 - +0.1 428,630 + GFF1766 0.35 -0.4 428,631 - GFF1766 0.35 +1.1 428,639 + GFF1766 0.35 -2.1 428,639 + GFF1766 0.35 -2.0 428,640 - GFF1766 0.35 +0.1 428,654 + GFF1766 0.37 -2.4 428,655 - GFF1766 0.37 -1.8 428,879 + GFF1766 0.56 +0.5 428,879 + GFF1766 0.56 -0.7 428,879 + GFF1766 0.56 -1.3 428,879 + GFF1766 0.56 -0.4 428,879 + GFF1766 0.56 -2.1 428,879 + GFF1766 0.56 -2.9 428,880 - GFF1766 0.56 -1.8 428,934 - GFF1766 0.60 -0.3 429,146 + GFF1766 0.78 -1.3 429,147 - GFF1766 0.78 +0.2 429,182 + GFF1766 0.81 -3.5 429,183 - GFF1766 0.81 +1.0 429,411 + +0.7 429,411 + -3.7 429,411 + +1.8 429,411 + +0.9 429,411 + -0.3 429,412 - -1.4 429,519 + GFF1767 0.38 -2.6 429,519 + GFF1767 0.38 -2.8 429,519 + GFF1767 0.38 +0.6 429,519 + GFF1767 0.38 -0.7 429,520 - GFF1767 0.39 +0.7 429,520 - GFF1767 0.39 +0.5 429,520 - GFF1767 0.39 +0.5 429,537 + GFF1767 0.45 +2.4 429,537 + GFF1767 0.45 -0.2 429,538 - GFF1767 0.45 +3.0 429,538 - GFF1767 0.45 -3.7 429,538 - GFF1767 0.45 +0.7 429,598 + GFF1767 0.66 -3.0 429,600 + GFF1767 0.67 +0.1 429,600 + GFF1767 0.67 +1.5 429,600 + GFF1767 0.67 -4.3 429,601 - GFF1767 0.67 +3.3 429,758 + -3.0 430,034 - GFF1768 0.21 -0.4 430,187 + GFF1768 0.32 -0.2 430,187 + GFF1768 0.32 +1.0 430,187 + GFF1768 0.32 -0.7 430,187 + GFF1768 0.32 -0.8 430,187 + GFF1768 0.32 +1.4 430,187 + GFF1768 0.32 +0.8 430,187 + GFF1768 0.32 +0.8 430,187 + GFF1768 0.32 -0.7 430,187 + GFF1768 0.32 +0.2 430,187 + GFF1768 0.32 -0.0 430,187 + GFF1768 0.32 -0.3 430,187 + GFF1768 0.32 -0.8 430,187 + GFF1768 0.32 -1.3 430,187 + GFF1768 0.32 -4.4 430,187 + GFF1768 0.32 -1.5 430,187 + GFF1768 0.32 +0.1 430,187 + GFF1768 0.32 +0.1 430,188 - GFF1768 0.32 -3.4 430,188 - GFF1768 0.32 +1.6 430,188 - GFF1768 0.32 -1.0 430,188 - GFF1768 0.32 -0.9 430,188 - GFF1768 0.32 +0.1 430,188 - GFF1768 0.32 +1.2
Or see this region's nucleotide sequence