Strain Fitness in Variovorax sp. SCN45 around GFF175

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF173 and GFF174 are separated by 100 nucleotidesGFF174 and GFF175 are separated by 36 nucleotidesGFF175 and GFF176 overlap by 1 nucleotidesGFF176 and GFF177 overlap by 4 nucleotides GFF173 - Hexuronate utilization operon transcriptional repressor ExuR, at 204,593 to 205,327 GFF173 GFF174 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 205,428 to 206,258 GFF174 GFF175 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,295 to 206,960 GFF175 GFF176 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,960 to 207,619 GFF176 GFF177 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 207,616 to 208,386 GFF177 Position (kb) 206 207Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 205.410 kb on + strandat 205.410 kb on + strandat 205.410 kb on + strandat 205.411 kb on - strandat 205.411 kb on - strandat 205.411 kb on - strandat 205.806 kb on + strand, within GFF174at 205.806 kb on + strand, within GFF174at 205.807 kb on - strand, within GFF174at 205.807 kb on - strand, within GFF174at 205.807 kb on - strand, within GFF174at 205.908 kb on + strand, within GFF174at 205.908 kb on + strand, within GFF174at 205.909 kb on - strand, within GFF174at 205.909 kb on - strand, within GFF174at 205.909 kb on - strand, within GFF174at 206.176 kb on - strandat 206.176 kb on - strandat 206.334 kb on + strandat 206.335 kb on - strandat 206.335 kb on - strandat 206.430 kb on + strand, within GFF175at 206.456 kb on + strand, within GFF175at 206.456 kb on + strand, within GFF175at 206.457 kb on - strand, within GFF175at 206.457 kb on - strand, within GFF175at 206.457 kb on - strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.517 kb on + strand, within GFF175at 206.517 kb on + strand, within GFF175at 206.518 kb on - strand, within GFF175at 206.518 kb on - strand, within GFF175at 206.601 kb on + strand, within GFF175at 206.601 kb on + strand, within GFF175at 206.601 kb on + strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.844 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.928 kb on + strandat 206.928 kb on + strandat 206.928 kb on + strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.996 kb on + strandat 206.997 kb on - strandat 207.173 kb on + strand, within GFF176at 207.173 kb on + strand, within GFF176at 207.174 kb on - strand, within GFF176at 207.185 kb on + strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.266 kb on + strand, within GFF176at 207.267 kb on - strand, within GFF176at 207.267 kb on - strand, within GFF176at 207.548 kb on + strand, within GFF176at 207.548 kb on + strand, within GFF176at 207.549 kb on - strand, within GFF176at 207.549 kb on - strand, within GFF176at 207.591 kb on + strandat 207.591 kb on + strandat 207.591 kb on + strandat 207.664 kb on + strandat 207.664 kb on + strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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205,410 + +1.3
205,410 + -0.5
205,410 + -0.5
205,411 - -1.5
205,411 - -0.0
205,411 - -1.4
205,806 + GFF174 0.45 -3.0
205,806 + GFF174 0.45 -2.0
205,807 - GFF174 0.46 -0.7
205,807 - GFF174 0.46 -1.3
205,807 - GFF174 0.46 -0.8
205,908 + GFF174 0.58 -0.7
205,908 + GFF174 0.58 -0.3
205,909 - GFF174 0.58 +1.3
205,909 - GFF174 0.58 -1.5
205,909 - GFF174 0.58 -2.3
206,176 - +0.3
206,176 - +1.3
206,334 + -0.0
206,335 - +1.5
206,335 - -0.0
206,430 + GFF175 0.20 -1.3
206,456 + GFF175 0.24 -0.2
206,456 + GFF175 0.24 -0.4
206,457 - GFF175 0.24 -1.6
206,457 - GFF175 0.24 -3.6
206,457 - GFF175 0.24 +3.8
206,466 + GFF175 0.26 -0.7
206,466 + GFF175 0.26 -2.8
206,466 + GFF175 0.26 +0.6
206,466 + GFF175 0.26 -1.5
206,467 - GFF175 0.26 -1.3
206,467 - GFF175 0.26 -0.8
206,467 - GFF175 0.26 -0.0
206,467 - GFF175 0.26 -2.7
206,517 + GFF175 0.33 -0.8
206,517 + GFF175 0.33 +1.5
206,518 - GFF175 0.33 -0.9
206,518 - GFF175 0.33 -3.2
206,601 + GFF175 0.46 +1.5
206,601 + GFF175 0.46 +2.4
206,601 + GFF175 0.46 -0.3
206,602 - GFF175 0.46 +0.4
206,602 - GFF175 0.46 -3.2
206,602 - GFF175 0.46 -0.1
206,602 - GFF175 0.46 -1.5
206,844 + GFF175 0.82 +0.4
206,883 + GFF175 0.88 +0.1
206,883 + GFF175 0.88 -2.3
206,883 + GFF175 0.88 -2.0
206,883 + GFF175 0.88 -1.0
206,883 + GFF175 0.88 +0.3
206,884 - GFF175 0.88 -0.4
206,884 - GFF175 0.88 +0.1
206,884 - GFF175 0.88 -1.5
206,884 - GFF175 0.88 -4.1
206,884 - GFF175 0.88 +1.7
206,884 - GFF175 0.88 -2.2
206,884 - GFF175 0.88 -1.0
206,928 + -2.3
206,928 + +0.7
206,928 + -2.5
206,929 - +0.2
206,929 - -0.6
206,929 - -2.5
206,929 - +0.3
206,929 - -3.3
206,996 + -1.0
206,997 - -4.0
207,173 + GFF176 0.32 -2.5
207,173 + GFF176 0.32 +0.7
207,174 - GFF176 0.32 -1.4
207,185 + GFF176 0.34 +0.7
207,186 - GFF176 0.34 -1.5
207,186 - GFF176 0.34 +0.7
207,186 - GFF176 0.34 -0.5
207,186 - GFF176 0.34 -3.5
207,266 + GFF176 0.46 -1.0
207,267 - GFF176 0.47 -1.0
207,267 - GFF176 0.47 +0.5
207,548 + GFF176 0.89 +0.7
207,548 + GFF176 0.89 +0.3
207,549 - GFF176 0.89 +1.2
207,549 - GFF176 0.89 -1.4
207,591 + -2.0
207,591 + -1.3
207,591 + -4.6
207,664 + -0.8
207,664 + +1.5
207,665 - +2.0
207,665 - -2.7
207,665 - -0.5
207,665 - -0.0
207,685 + -2.5
207,685 + -3.0
207,685 + +0.3
207,685 + -1.0
207,686 - -1.0

Or see this region's nucleotide sequence