Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1743 and GFF1744 are separated by 139 nucleotides GFF1744 and GFF1745 are separated by 15 nucleotides
GFF1743 - Transcriptional regulator, LysR family, at 402,539 to 403,558
GFF1743
GFF1744 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 403,698 to 405,272
GFF1744
GFF1745 - Acyl-CoA dehydrogenase, at 405,288 to 406,523
GFF1745
Position (kb) 403
404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 402.990 kb on - strand, within GFF1743 at 402.990 kb on - strand, within GFF1743 at 403.046 kb on + strand, within GFF1743 at 403.233 kb on + strand, within GFF1743 at 403.233 kb on + strand, within GFF1743 at 403.234 kb on - strand, within GFF1743 at 403.234 kb on - strand, within GFF1743 at 403.234 kb on - strand, within GFF1743 at 403.406 kb on + strand, within GFF1743 at 403.407 kb on - strand, within GFF1743 at 403.407 kb on - strand, within GFF1743 at 403.407 kb on - strand, within GFF1743 at 403.557 kb on - strand at 403.809 kb on + strand at 403.809 kb on + strand at 403.810 kb on - strand at 403.810 kb on - strand at 403.893 kb on + strand, within GFF1744 at 403.893 kb on + strand, within GFF1744 at 403.893 kb on + strand, within GFF1744 at 403.894 kb on - strand, within GFF1744 at 403.894 kb on - strand, within GFF1744 at 403.938 kb on + strand, within GFF1744 at 403.939 kb on - strand, within GFF1744 at 403.939 kb on - strand, within GFF1744 at 404.130 kb on + strand, within GFF1744 at 404.130 kb on + strand, within GFF1744 at 404.131 kb on - strand, within GFF1744 at 404.208 kb on + strand, within GFF1744 at 404.208 kb on + strand, within GFF1744 at 404.208 kb on + strand, within GFF1744 at 404.209 kb on - strand, within GFF1744 at 404.209 kb on - strand, within GFF1744 at 404.506 kb on + strand, within GFF1744 at 404.626 kb on - strand, within GFF1744 at 404.880 kb on + strand, within GFF1744 at 404.919 kb on + strand, within GFF1744 at 404.919 kb on + strand, within GFF1744 at 404.920 kb on - strand, within GFF1744 at 404.920 kb on - strand, within GFF1744 at 404.925 kb on + strand, within GFF1744 at 404.925 kb on + strand, within GFF1744 at 404.925 kb on + strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.976 kb on + strand, within GFF1744 at 405.003 kb on + strand, within GFF1744 at 405.003 kb on + strand, within GFF1744 at 405.004 kb on - strand, within GFF1744 at 405.436 kb on + strand, within GFF1745 at 405.522 kb on + strand, within GFF1745 at 405.523 kb on - strand, within GFF1745 at 405.523 kb on - strand, within GFF1745 at 405.870 kb on + strand, within GFF1745 at 405.871 kb on - strand, within GFF1745 at 405.871 kb on - strand, within GFF1745 at 405.871 kb on - strand, within GFF1745 at 405.972 kb on + strand, within GFF1745 at 406.164 kb on + strand, within GFF1745 at 406.165 kb on - strand, within GFF1745 at 406.165 kb on - strand, within GFF1745
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 402,990 - GFF1743 0.44 -1.4 402,990 - GFF1743 0.44 -0.8 403,046 + GFF1743 0.50 +0.1 403,233 + GFF1743 0.68 +0.5 403,233 + GFF1743 0.68 -1.3 403,234 - GFF1743 0.68 +0.6 403,234 - GFF1743 0.68 -2.5 403,234 - GFF1743 0.68 +1.3 403,406 + GFF1743 0.85 -0.9 403,407 - GFF1743 0.85 +0.4 403,407 - GFF1743 0.85 -1.4 403,407 - GFF1743 0.85 -4.5 403,557 - -0.5 403,809 + +0.5 403,809 + -1.4 403,810 - -1.6 403,810 - -1.4 403,893 + GFF1744 0.12 -2.4 403,893 + GFF1744 0.12 -2.9 403,893 + GFF1744 0.12 -2.5 403,894 - GFF1744 0.12 -2.3 403,894 - GFF1744 0.12 -0.6 403,938 + GFF1744 0.15 -2.2 403,939 - GFF1744 0.15 -1.1 403,939 - GFF1744 0.15 +0.7 404,130 + GFF1744 0.27 -3.6 404,130 + GFF1744 0.27 -0.9 404,131 - GFF1744 0.27 -0.7 404,208 + GFF1744 0.32 -1.7 404,208 + GFF1744 0.32 -0.2 404,208 + GFF1744 0.32 -4.0 404,209 - GFF1744 0.32 -0.1 404,209 - GFF1744 0.32 +0.0 404,506 + GFF1744 0.51 -0.8 404,626 - GFF1744 0.59 -2.5 404,880 + GFF1744 0.75 -0.5 404,919 + GFF1744 0.78 -1.1 404,919 + GFF1744 0.78 -1.8 404,920 - GFF1744 0.78 -1.3 404,920 - GFF1744 0.78 +0.4 404,925 + GFF1744 0.78 -0.9 404,925 + GFF1744 0.78 -1.5 404,925 + GFF1744 0.78 +2.3 404,926 - GFF1744 0.78 -1.6 404,926 - GFF1744 0.78 +1.3 404,926 - GFF1744 0.78 -0.3 404,926 - GFF1744 0.78 -0.3 404,926 - GFF1744 0.78 +0.1 404,926 - GFF1744 0.78 +0.0 404,976 + GFF1744 0.81 -1.3 405,003 + GFF1744 0.83 +0.1 405,003 + GFF1744 0.83 +0.4 405,004 - GFF1744 0.83 -2.0 405,436 + GFF1745 0.12 -0.4 405,522 + GFF1745 0.19 -0.1 405,523 - GFF1745 0.19 -1.1 405,523 - GFF1745 0.19 +1.0 405,870 + GFF1745 0.47 -2.4 405,871 - GFF1745 0.47 -2.8 405,871 - GFF1745 0.47 -0.1 405,871 - GFF1745 0.47 -2.6 405,972 + GFF1745 0.55 +1.0 406,164 + GFF1745 0.71 +0.5 406,165 - GFF1745 0.71 -2.3 406,165 - GFF1745 0.71 -1.3
Or see this region's nucleotide sequence