Strain Fitness in Variovorax sp. SCN45 around GFF1697

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1696 and GFF1697 are separated by 196 nucleotidesGFF1697 and GFF1698 are separated by 133 nucleotides GFF1696 - Transcriptional regulator, LysR family, at 341,772 to 342,632 GFF1696 GFF1697 - Argininosuccinate lyase-like protein, at 342,829 to 344,352 GFF1697 GFF1698 - BUG/TctC family periplasmic protein, at 344,486 to 345,445 GFF1698 Position (kb) 342 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 341.992 kb on + strand, within GFF1696at 342.022 kb on + strand, within GFF1696at 342.023 kb on - strand, within GFF1696at 342.686 kb on + strandat 342.686 kb on + strandat 342.686 kb on + strandat 342.686 kb on + strandat 342.687 kb on - strandat 342.687 kb on - strandat 342.687 kb on - strandat 342.724 kb on - strandat 342.724 kb on - strandat 342.734 kb on + strandat 342.734 kb on + strandat 342.735 kb on - strandat 342.735 kb on - strandat 342.735 kb on - strandat 342.736 kb on + strandat 342.736 kb on + strandat 342.736 kb on + strandat 342.736 kb on + strandat 342.736 kb on + strandat 342.736 kb on + strandat 342.736 kb on + strandat 342.736 kb on + strandat 342.736 kb on + strandat 342.737 kb on - strandat 342.737 kb on - strandat 342.737 kb on - strandat 342.737 kb on - strandat 342.737 kb on - strandat 342.829 kb on - strandat 342.829 kb on - strandat 342.829 kb on - strandat 342.829 kb on - strandat 342.829 kb on - strandat 342.901 kb on + strandat 342.901 kb on + strandat 342.902 kb on - strandat 343.117 kb on + strand, within GFF1697at 343.117 kb on + strand, within GFF1697at 343.117 kb on + strand, within GFF1697at 343.117 kb on + strand, within GFF1697at 343.117 kb on + strand, within GFF1697at 343.118 kb on - strand, within GFF1697at 343.118 kb on - strand, within GFF1697at 343.207 kb on + strand, within GFF1697at 343.207 kb on + strand, within GFF1697at 343.208 kb on - strand, within GFF1697at 343.208 kb on - strand, within GFF1697at 343.309 kb on + strand, within GFF1697at 343.309 kb on + strand, within GFF1697at 343.309 kb on + strand, within GFF1697at 343.309 kb on + strand, within GFF1697at 343.309 kb on + strand, within GFF1697at 343.310 kb on - strand, within GFF1697at 343.351 kb on + strand, within GFF1697at 343.351 kb on + strand, within GFF1697at 343.351 kb on + strand, within GFF1697at 343.351 kb on + strand, within GFF1697at 343.352 kb on - strand, within GFF1697at 343.408 kb on + strand, within GFF1697at 343.408 kb on + strand, within GFF1697at 343.408 kb on + strand, within GFF1697at 343.408 kb on + strand, within GFF1697at 343.408 kb on + strand, within GFF1697at 343.408 kb on + strand, within GFF1697at 343.408 kb on + strand, within GFF1697at 343.408 kb on + strand, within GFF1697at 343.408 kb on + strand, within GFF1697at 343.409 kb on - strand, within GFF1697at 343.546 kb on + strand, within GFF1697at 343.546 kb on + strand, within GFF1697at 343.546 kb on + strand, within GFF1697at 343.546 kb on + strand, within GFF1697at 343.546 kb on + strand, within GFF1697at 343.663 kb on + strand, within GFF1697at 343.663 kb on + strand, within GFF1697at 343.663 kb on + strand, within GFF1697at 343.664 kb on - strand, within GFF1697at 343.664 kb on - strand, within GFF1697at 343.664 kb on - strand, within GFF1697at 343.664 kb on - strand, within GFF1697at 343.717 kb on + strand, within GFF1697at 343.717 kb on + strand, within GFF1697at 343.718 kb on - strand, within GFF1697at 344.050 kb on + strand, within GFF1697at 344.553 kb on - strandat 344.553 kb on - strandat 344.553 kb on - strandat 344.709 kb on - strand, within GFF1698at 344.735 kb on + strand, within GFF1698at 344.736 kb on - strand, within GFF1698at 344.783 kb on + strand, within GFF1698at 344.783 kb on + strand, within GFF1698at 344.783 kb on + strand, within GFF1698at 344.783 kb on + strand, within GFF1698at 344.783 kb on + strand, within GFF1698at 344.784 kb on - strand, within GFF1698at 344.784 kb on - strand, within GFF1698at 344.906 kb on + strand, within GFF1698at 344.907 kb on - strand, within GFF1698at 345.107 kb on + strand, within GFF1698at 345.107 kb on + strand, within GFF1698at 345.108 kb on - strand, within GFF1698at 345.108 kb on - strand, within GFF1698at 345.227 kb on + strand, within GFF1698at 345.227 kb on + strand, within GFF1698at 345.227 kb on + strand, within GFF1698at 345.228 kb on - strand, within GFF1698at 345.344 kb on + strand, within GFF1698at 345.345 kb on - strand, within GFF1698

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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341,992 + GFF1696 0.26 -1.8
342,022 + GFF1696 0.29 -1.9
342,023 - GFF1696 0.29 -1.1
342,686 + +0.4
342,686 + +1.3
342,686 + +0.0
342,686 + +1.3
342,687 - +0.6
342,687 - +1.3
342,687 - -3.5
342,724 - +0.0
342,724 - -1.0
342,734 + -1.2
342,734 + -1.0
342,735 - +1.1
342,735 - -2.9
342,735 - -1.4
342,736 + -0.8
342,736 + +0.5
342,736 + -1.3
342,736 + -0.7
342,736 + +1.0
342,736 + -2.0
342,736 + -2.8
342,736 + +1.4
342,736 + +1.1
342,737 - +0.5
342,737 - +0.1
342,737 - -0.5
342,737 - +0.8
342,737 - +0.7
342,829 - -3.2
342,829 - -0.8
342,829 - +0.3
342,829 - +0.2
342,829 - +2.4
342,901 + -0.5
342,901 + +2.0
342,902 - +1.3
343,117 + GFF1697 0.19 -1.1
343,117 + GFF1697 0.19 -0.2
343,117 + GFF1697 0.19 +0.9
343,117 + GFF1697 0.19 +1.3
343,117 + GFF1697 0.19 +2.5
343,118 - GFF1697 0.19 -0.3
343,118 - GFF1697 0.19 -0.5
343,207 + GFF1697 0.25 -0.3
343,207 + GFF1697 0.25 +0.0
343,208 - GFF1697 0.25 +2.4
343,208 - GFF1697 0.25 +0.2
343,309 + GFF1697 0.31 +0.3
343,309 + GFF1697 0.31 -0.9
343,309 + GFF1697 0.31 -2.1
343,309 + GFF1697 0.31 +1.9
343,309 + GFF1697 0.31 +0.7
343,310 - GFF1697 0.32 -2.6
343,351 + GFF1697 0.34 +1.6
343,351 + GFF1697 0.34 -0.3
343,351 + GFF1697 0.34 -0.8
343,351 + GFF1697 0.34 +1.0
343,352 - GFF1697 0.34 -1.8
343,408 + GFF1697 0.38 +0.1
343,408 + GFF1697 0.38 +0.5
343,408 + GFF1697 0.38 +0.6
343,408 + GFF1697 0.38 +1.0
343,408 + GFF1697 0.38 +0.0
343,408 + GFF1697 0.38 -3.4
343,408 + GFF1697 0.38 +2.0
343,408 + GFF1697 0.38 -1.2
343,408 + GFF1697 0.38 +0.3
343,409 - GFF1697 0.38 +0.5
343,546 + GFF1697 0.47 -3.3
343,546 + GFF1697 0.47 -1.0
343,546 + GFF1697 0.47 -0.0
343,546 + GFF1697 0.47 +1.0
343,546 + GFF1697 0.47 -2.3
343,663 + GFF1697 0.55 -1.3
343,663 + GFF1697 0.55 -2.0
343,663 + GFF1697 0.55 +0.7
343,664 - GFF1697 0.55 +0.5
343,664 - GFF1697 0.55 -1.3
343,664 - GFF1697 0.55 -1.0
343,664 - GFF1697 0.55 +0.1
343,717 + GFF1697 0.58 -1.7
343,717 + GFF1697 0.58 -1.3
343,718 - GFF1697 0.58 +0.9
344,050 + GFF1697 0.80 +0.3
344,553 - -2.3
344,553 - -1.3
344,553 - -1.7
344,709 - GFF1698 0.23 +1.2
344,735 + GFF1698 0.26 -0.4
344,736 - GFF1698 0.26 -0.8
344,783 + GFF1698 0.31 +0.3
344,783 + GFF1698 0.31 +0.5
344,783 + GFF1698 0.31 -1.0
344,783 + GFF1698 0.31 -1.7
344,783 + GFF1698 0.31 -2.0
344,784 - GFF1698 0.31 -1.0
344,784 - GFF1698 0.31 +0.6
344,906 + GFF1698 0.44 -0.5
344,907 - GFF1698 0.44 -0.8
345,107 + GFF1698 0.65 -2.6
345,107 + GFF1698 0.65 -2.9
345,108 - GFF1698 0.65 +0.6
345,108 - GFF1698 0.65 -2.2
345,227 + GFF1698 0.77 +0.8
345,227 + GFF1698 0.77 -1.5
345,227 + GFF1698 0.77 -2.8
345,228 - GFF1698 0.77 -2.4
345,344 + GFF1698 0.89 -1.0
345,345 - GFF1698 0.89 +0.0

Or see this region's nucleotide sequence