Strain Fitness in Variovorax sp. SCN45 around GFF1661

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1660 and GFF1661 are separated by 17 nucleotidesGFF1661 and GFF1662 are separated by 316 nucleotides GFF1660 - Type IV fimbrial biogenesis protein PilY1, at 302,273 to 304,027 GFF1660 GFF1661 - no description, at 304,045 to 304,251 GFF1661 GFF1662 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 304,568 to 306,055 GFF1662 Position (kb) 304 305Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 303.102 kb on + strand, within GFF1660at 303.102 kb on + strand, within GFF1660at 303.102 kb on + strand, within GFF1660at 303.102 kb on + strand, within GFF1660at 303.102 kb on + strand, within GFF1660at 303.103 kb on - strand, within GFF1660at 303.103 kb on - strand, within GFF1660at 303.103 kb on - strand, within GFF1660at 303.103 kb on - strand, within GFF1660at 303.438 kb on + strand, within GFF1660at 303.439 kb on - strand, within GFF1660at 303.459 kb on + strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.504 kb on + strand, within GFF1660at 303.504 kb on + strand, within GFF1660at 303.505 kb on - strand, within GFF1660at 303.505 kb on - strand, within GFF1660at 303.505 kb on - strand, within GFF1660at 303.505 kb on - strand, within GFF1660at 303.945 kb on + strandat 303.945 kb on + strandat 303.945 kb on + strandat 303.945 kb on + strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.047 kb on - strandat 304.047 kb on - strandat 304.080 kb on + strand, within GFF1661at 304.080 kb on + strand, within GFF1661at 304.081 kb on - strand, within GFF1661at 304.219 kb on + strand, within GFF1661at 304.283 kb on + strandat 304.283 kb on + strandat 304.283 kb on + strandat 304.283 kb on + strandat 304.284 kb on - strandat 304.289 kb on - strandat 304.332 kb on - strandat 304.332 kb on - strandat 304.342 kb on - strandat 304.342 kb on - strandat 304.342 kb on - strandat 304.484 kb on + strandat 304.484 kb on + strandat 304.485 kb on - strandat 304.485 kb on - strandat 304.485 kb on - strandat 304.488 kb on + strandat 304.488 kb on + strandat 304.489 kb on - strandat 304.659 kb on + strandat 304.890 kb on + strand, within GFF1662at 304.890 kb on + strand, within GFF1662at 304.890 kb on + strand, within GFF1662at 304.890 kb on + strand, within GFF1662at 304.890 kb on + strand, within GFF1662at 304.890 kb on + strand, within GFF1662at 304.891 kb on - strand, within GFF1662at 304.891 kb on - strand, within GFF1662at 304.891 kb on - strand, within GFF1662at 304.891 kb on - strand, within GFF1662at 305.088 kb on + strand, within GFF1662at 305.089 kb on - strand, within GFF1662at 305.089 kb on - strand, within GFF1662at 305.089 kb on - strand, within GFF1662at 305.089 kb on - strand, within GFF1662at 305.089 kb on - strand, within GFF1662at 305.089 kb on - strand, within GFF1662at 305.163 kb on + strand, within GFF1662at 305.163 kb on + strand, within GFF1662at 305.163 kb on + strand, within GFF1662at 305.163 kb on + strand, within GFF1662at 305.163 kb on + strand, within GFF1662at 305.164 kb on - strand, within GFF1662at 305.164 kb on - strand, within GFF1662at 305.164 kb on - strand, within GFF1662at 305.164 kb on - strand, within GFF1662at 305.164 kb on - strand, within GFF1662at 305.164 kb on - strand, within GFF1662

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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303,102 + GFF1660 0.47 -2.8
303,102 + GFF1660 0.47 -2.1
303,102 + GFF1660 0.47 -0.8
303,102 + GFF1660 0.47 -1.1
303,102 + GFF1660 0.47 +2.4
303,103 - GFF1660 0.47 -1.4
303,103 - GFF1660 0.47 +1.3
303,103 - GFF1660 0.47 -1.4
303,103 - GFF1660 0.47 -0.3
303,438 + GFF1660 0.66 +1.8
303,439 - GFF1660 0.66 +0.2
303,459 + GFF1660 0.68 +1.6
303,460 - GFF1660 0.68 -3.6
303,460 - GFF1660 0.68 +0.2
303,460 - GFF1660 0.68 -1.7
303,460 - GFF1660 0.68 -1.0
303,460 - GFF1660 0.68 +0.7
303,460 - GFF1660 0.68 +0.1
303,460 - GFF1660 0.68 -0.3
303,460 - GFF1660 0.68 -3.1
303,460 - GFF1660 0.68 +0.3
303,504 + GFF1660 0.70 -1.6
303,504 + GFF1660 0.70 -2.4
303,505 - GFF1660 0.70 -0.1
303,505 - GFF1660 0.70 +0.3
303,505 - GFF1660 0.70 -0.3
303,505 - GFF1660 0.70 -0.6
303,945 + +1.3
303,945 + +0.4
303,945 + +0.5
303,945 + +1.0
303,946 - -1.3
303,946 - -0.5
303,946 - -2.1
303,946 - -2.9
303,946 - +1.9
303,946 - -0.3
303,946 - +0.2
303,946 - -3.2
304,008 + +0.1
304,008 + +1.4
304,008 + +0.9
304,008 + +2.5
304,008 + -2.4
304,008 + -2.4
304,008 + +0.9
304,009 - -0.3
304,009 - +0.5
304,009 - +0.1
304,009 - -0.3
304,009 - -0.2
304,009 - +0.2
304,009 - -0.5
304,047 - -0.8
304,047 - +2.1
304,080 + GFF1661 0.17 -0.3
304,080 + GFF1661 0.17 -2.2
304,081 - GFF1661 0.17 -0.6
304,219 + GFF1661 0.84 -0.6
304,283 + -3.0
304,283 + -2.2
304,283 + +0.3
304,283 + +0.7
304,284 - -0.6
304,289 - -1.5
304,332 - -0.6
304,332 - -2.4
304,342 - +1.8
304,342 - -0.5
304,342 - +1.1
304,484 + -0.8
304,484 + -1.2
304,485 - -0.6
304,485 - +0.3
304,485 - -2.6
304,488 + -4.2
304,488 + +0.0
304,489 - +0.6
304,659 + -0.9
304,890 + GFF1662 0.22 +1.0
304,890 + GFF1662 0.22 -0.8
304,890 + GFF1662 0.22 -2.4
304,890 + GFF1662 0.22 -2.7
304,890 + GFF1662 0.22 -2.0
304,890 + GFF1662 0.22 -1.0
304,891 - GFF1662 0.22 +5.1
304,891 - GFF1662 0.22 -1.4
304,891 - GFF1662 0.22 -2.0
304,891 - GFF1662 0.22 -2.2
305,088 + GFF1662 0.35 +1.3
305,089 - GFF1662 0.35 -1.9
305,089 - GFF1662 0.35 -0.6
305,089 - GFF1662 0.35 +2.5
305,089 - GFF1662 0.35 +1.6
305,089 - GFF1662 0.35 -2.6
305,089 - GFF1662 0.35 +2.6
305,163 + GFF1662 0.40 -1.2
305,163 + GFF1662 0.40 -1.4
305,163 + GFF1662 0.40 -1.2
305,163 + GFF1662 0.40 +1.1
305,163 + GFF1662 0.40 +0.5
305,164 - GFF1662 0.40 +1.3
305,164 - GFF1662 0.40 +0.9
305,164 - GFF1662 0.40 -0.1
305,164 - GFF1662 0.40 -2.3
305,164 - GFF1662 0.40 -1.6
305,164 - GFF1662 0.40 -0.5

Or see this region's nucleotide sequence