Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1638 and GFF1639 overlap by 4 nucleotides GFF1639 and GFF1640 overlap by 4 nucleotides
GFF1638 - Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 264,832 to 268,113
GFF1638
GFF1639 - Polyketide synthase modules and related proteins, at 268,110 to 271,196
GFF1639
GFF1640 - Polyketide synthase modules and related proteins, at 271,193 to 278,275
GFF1640
Position (kb) 268
269
270
271
272 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 267.244 kb on + strand, within GFF1638 at 267.534 kb on - strand, within GFF1638 at 267.534 kb on - strand, within GFF1638 at 267.543 kb on - strand, within GFF1638 at 267.599 kb on + strand, within GFF1638 at 268.043 kb on + strand at 268.044 kb on - strand at 268.044 kb on - strand at 268.044 kb on - strand at 268.781 kb on - strand, within GFF1639 at 268.781 kb on - strand, within GFF1639 at 268.894 kb on + strand, within GFF1639 at 269.057 kb on - strand, within GFF1639 at 269.057 kb on - strand, within GFF1639 at 269.065 kb on + strand, within GFF1639 at 269.066 kb on - strand, within GFF1639 at 269.070 kb on - strand, within GFF1639 at 269.407 kb on + strand, within GFF1639 at 269.407 kb on + strand, within GFF1639 at 269.408 kb on - strand, within GFF1639 at 269.408 kb on - strand, within GFF1639 at 269.408 kb on - strand, within GFF1639 at 269.470 kb on + strand, within GFF1639 at 269.471 kb on - strand, within GFF1639 at 269.471 kb on - strand, within GFF1639 at 269.480 kb on - strand, within GFF1639 at 269.882 kb on + strand, within GFF1639 at 269.883 kb on - strand, within GFF1639 at 269.883 kb on - strand, within GFF1639 at 269.883 kb on - strand, within GFF1639 at 270.635 kb on - strand, within GFF1639 at 270.700 kb on + strand, within GFF1639 at 270.743 kb on - strand, within GFF1639 at 271.309 kb on - strand at 271.449 kb on + strand at 271.695 kb on + strand at 271.696 kb on - strand at 271.743 kb on + strand at 271.743 kb on + strand at 271.744 kb on - strand at 271.932 kb on + strand, within GFF1640 at 271.933 kb on - strand, within GFF1640 at 271.948 kb on - strand, within GFF1640 at 271.948 kb on - strand, within GFF1640 at 271.948 kb on - strand, within GFF1640 at 271.995 kb on + strand, within GFF1640 at 272.103 kb on + strand, within GFF1640
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 267,244 + GFF1638 0.73 -4.2 267,534 - GFF1638 0.82 -0.3 267,534 - GFF1638 0.82 -1.3 267,543 - GFF1638 0.83 +0.5 267,599 + GFF1638 0.84 -0.3 268,043 + +2.1 268,044 - -1.2 268,044 - +0.0 268,044 - +1.4 268,781 - GFF1639 0.22 -3.2 268,781 - GFF1639 0.22 -1.2 268,894 + GFF1639 0.25 -0.2 269,057 - GFF1639 0.31 -1.6 269,057 - GFF1639 0.31 +0.8 269,065 + GFF1639 0.31 -0.2 269,066 - GFF1639 0.31 +1.1 269,070 - GFF1639 0.31 -0.4 269,407 + GFF1639 0.42 -4.0 269,407 + GFF1639 0.42 +0.3 269,408 - GFF1639 0.42 -1.0 269,408 - GFF1639 0.42 -0.8 269,408 - GFF1639 0.42 -2.5 269,470 + GFF1639 0.44 -2.2 269,471 - GFF1639 0.44 +0.1 269,471 - GFF1639 0.44 -0.7 269,480 - GFF1639 0.44 -1.3 269,882 + GFF1639 0.57 -0.7 269,883 - GFF1639 0.57 -2.3 269,883 - GFF1639 0.57 +0.0 269,883 - GFF1639 0.57 -1.3 270,635 - GFF1639 0.82 +1.8 270,700 + GFF1639 0.84 -2.2 270,743 - GFF1639 0.85 -0.2 271,309 - -1.5 271,449 + -3.5 271,695 + +1.0 271,696 - +1.5 271,743 + +0.3 271,743 + +0.7 271,744 - +0.8 271,932 + GFF1640 0.10 -1.3 271,933 - GFF1640 0.10 +0.0 271,948 - GFF1640 0.11 -1.3 271,948 - GFF1640 0.11 -0.6 271,948 - GFF1640 0.11 -2.1 271,995 + GFF1640 0.11 +0.8 272,103 + GFF1640 0.13 -0.6
Or see this region's nucleotide sequence