Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1586 and GFF1587 are separated by 0 nucleotides GFF1587 and GFF1588 are separated by 197 nucleotides
GFF1586 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 185,053 to 186,078
GFF1586
GFF1587 - no description, at 186,079 to 186,669
GFF1587
GFF1588 - Serine phosphatase RsbU, regulator of sigma subunit, at 186,867 to 188,099
GFF1588
Position (kb) 186
187 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 185.212 kb on + strand, within GFF1586 at 185.404 kb on + strand, within GFF1586 at 185.404 kb on + strand, within GFF1586 at 185.549 kb on + strand, within GFF1586 at 185.550 kb on - strand, within GFF1586 at 186.052 kb on + strand at 186.170 kb on + strand, within GFF1587 at 186.170 kb on + strand, within GFF1587 at 186.171 kb on - strand, within GFF1587 at 186.171 kb on - strand, within GFF1587 at 186.688 kb on + strand at 186.688 kb on + strand at 186.688 kb on + strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.715 kb on + strand at 186.715 kb on + strand at 186.716 kb on - strand at 186.716 kb on - strand at 186.716 kb on - strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.810 kb on + strand at 186.810 kb on + strand at 186.829 kb on - strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.837 kb on + strand at 186.837 kb on + strand at 186.837 kb on + strand at 186.838 kb on - strand at 186.838 kb on - strand at 186.838 kb on - strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.846 kb on - strand at 186.885 kb on + strand at 186.886 kb on - strand at 186.886 kb on - strand at 187.110 kb on + strand, within GFF1588 at 187.110 kb on + strand, within GFF1588 at 187.111 kb on - strand, within GFF1588 at 187.344 kb on + strand, within GFF1588 at 187.345 kb on - strand, within GFF1588 at 187.347 kb on + strand, within GFF1588 at 187.631 kb on + strand, within GFF1588 at 187.640 kb on + strand, within GFF1588
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 185,212 + GFF1586 0.15 +2.8 185,404 + GFF1586 0.34 -0.7 185,404 + GFF1586 0.34 +0.6 185,549 + GFF1586 0.48 -2.8 185,550 - GFF1586 0.48 -2.3 186,052 + +0.1 186,170 + GFF1587 0.15 -2.7 186,170 + GFF1587 0.15 +0.5 186,171 - GFF1587 0.16 +2.6 186,171 - GFF1587 0.16 -1.9 186,688 + +1.4 186,688 + -1.6 186,688 + -1.4 186,689 - +0.4 186,689 - -1.7 186,689 - +0.9 186,689 - -0.5 186,690 + +1.6 186,690 + +0.2 186,690 + -1.2 186,690 + -2.4 186,690 + -2.8 186,691 - -1.7 186,691 - +0.8 186,691 - -0.4 186,691 - -2.0 186,691 - -2.2 186,691 - +0.5 186,715 + -1.8 186,715 + -0.1 186,716 - +1.9 186,716 - -1.5 186,716 - -1.8 186,806 + +0.1 186,806 + -1.9 186,806 + -0.7 186,806 + -4.1 186,806 + -0.7 186,806 + -2.0 186,807 - -1.7 186,807 - +0.1 186,807 - +0.8 186,807 - -1.1 186,807 - +2.1 186,810 + -1.5 186,810 + +1.3 186,829 - +0.4 186,833 + +4.1 186,833 + -0.8 186,833 + -2.3 186,833 + -0.0 186,833 + -1.1 186,833 + -1.1 186,833 + -0.4 186,833 + -3.3 186,833 + -0.7 186,834 - +1.3 186,834 - +1.9 186,834 - -0.4 186,834 - -0.7 186,834 - +1.3 186,834 - -3.0 186,834 - -2.7 186,834 - -1.7 186,837 + -0.1 186,837 + -1.0 186,837 + -2.2 186,838 - -0.9 186,838 - -0.2 186,838 - +0.2 186,845 + +2.3 186,845 + +1.2 186,845 + +1.4 186,845 + +0.2 186,845 + -2.5 186,845 + -0.7 186,845 + -2.9 186,846 - -2.8 186,885 + -0.2 186,886 - -1.8 186,886 - -0.7 187,110 + GFF1588 0.20 +0.1 187,110 + GFF1588 0.20 -3.1 187,111 - GFF1588 0.20 +0.9 187,344 + GFF1588 0.39 -2.1 187,345 - GFF1588 0.39 -1.1 187,347 + GFF1588 0.39 -3.0 187,631 + GFF1588 0.62 +0.3 187,640 + GFF1588 0.63 +1.0
Or see this region's nucleotide sequence