Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1559 and GFF1560 are separated by 186 nucleotides GFF1560 and GFF1561 are separated by 42 nucleotides GFF1561 and GFF1562 are separated by 147 nucleotides
GFF1559 - Mg(2+)-transport-ATPase-associated protein MgtC, at 160,997 to 161,716
GFF1559
GFF1560 - hypothetical protein, at 161,903 to 162,370
GFF1560
GFF1561 - Aldehyde dehydrogenase (EC 1.2.1.3), at 162,413 to 163,849
GFF1561
GFF1562 - Transcriptional regulator, LysR family, at 163,997 to 164,920
GFF1562
Position (kb) 162
163
164 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 161.775 kb on + strand at 161.775 kb on + strand at 161.776 kb on - strand at 161.814 kb on + strand at 161.815 kb on - strand at 161.855 kb on + strand at 161.856 kb on - strand at 161.884 kb on + strand at 161.885 kb on - strand at 161.885 kb on - strand at 162.213 kb on + strand, within GFF1560 at 162.463 kb on - strand at 162.639 kb on + strand, within GFF1561 at 162.685 kb on - strand, within GFF1561 at 162.855 kb on + strand, within GFF1561 at 162.855 kb on + strand, within GFF1561 at 162.855 kb on + strand, within GFF1561 at 162.855 kb on + strand, within GFF1561 at 162.855 kb on + strand, within GFF1561 at 162.856 kb on - strand, within GFF1561 at 162.856 kb on - strand, within GFF1561 at 162.856 kb on - strand, within GFF1561 at 162.856 kb on - strand, within GFF1561 at 163.196 kb on + strand, within GFF1561 at 163.197 kb on - strand, within GFF1561 at 163.536 kb on + strand, within GFF1561 at 163.575 kb on + strand, within GFF1561 at 163.827 kb on + strand at 163.827 kb on + strand at 163.827 kb on + strand at 163.827 kb on + strand at 163.827 kb on + strand at 163.827 kb on + strand at 163.827 kb on + strand at 163.827 kb on + strand at 163.827 kb on + strand at 163.827 kb on + strand at 163.827 kb on + strand at 163.828 kb on - strand at 163.828 kb on - strand at 163.928 kb on + strand at 163.928 kb on + strand at 163.928 kb on + strand at 163.928 kb on + strand at 163.929 kb on - strand at 163.929 kb on - strand at 163.929 kb on - strand at 163.929 kb on - strand at 163.940 kb on - strand at 164.011 kb on + strand at 164.011 kb on + strand at 164.012 kb on - strand at 164.100 kb on + strand, within GFF1562 at 164.100 kb on + strand, within GFF1562 at 164.195 kb on + strand, within GFF1562 at 164.196 kb on - strand, within GFF1562 at 164.196 kb on - strand, within GFF1562 at 164.196 kb on - strand, within GFF1562 at 164.196 kb on - strand, within GFF1562 at 164.342 kb on + strand, within GFF1562 at 164.603 kb on + strand, within GFF1562 at 164.603 kb on + strand, within GFF1562 at 164.603 kb on + strand, within GFF1562 at 164.603 kb on + strand, within GFF1562 at 164.603 kb on + strand, within GFF1562 at 164.603 kb on + strand, within GFF1562 at 164.604 kb on - strand, within GFF1562 at 164.604 kb on - strand, within GFF1562 at 164.816 kb on + strand, within GFF1562 at 164.816 kb on + strand, within GFF1562 at 164.817 kb on - strand, within GFF1562 at 164.817 kb on - strand, within GFF1562 at 164.817 kb on - strand, within GFF1562 at 164.817 kb on - strand, within GFF1562
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 161,775 + -1.1 161,775 + +0.2 161,776 - -2.7 161,814 + -3.3 161,815 - -0.5 161,855 + -0.4 161,856 - +3.7 161,884 + -2.2 161,885 - +0.5 161,885 - -5.1 162,213 + GFF1560 0.66 -1.6 162,463 - -1.1 162,639 + GFF1561 0.16 -0.1 162,685 - GFF1561 0.19 -0.3 162,855 + GFF1561 0.31 -0.2 162,855 + GFF1561 0.31 -0.7 162,855 + GFF1561 0.31 -1.8 162,855 + GFF1561 0.31 -4.1 162,855 + GFF1561 0.31 -1.6 162,856 - GFF1561 0.31 -0.5 162,856 - GFF1561 0.31 -1.5 162,856 - GFF1561 0.31 -2.3 162,856 - GFF1561 0.31 -0.1 163,196 + GFF1561 0.54 -3.9 163,197 - GFF1561 0.55 -0.3 163,536 + GFF1561 0.78 -2.0 163,575 + GFF1561 0.81 -3.3 163,827 + -0.2 163,827 + +0.0 163,827 + -0.3 163,827 + +1.1 163,827 + -0.5 163,827 + +0.6 163,827 + -0.7 163,827 + +1.4 163,827 + -1.0 163,827 + -1.7 163,827 + +0.9 163,828 - +2.6 163,828 - -1.1 163,928 + +0.1 163,928 + -0.3 163,928 + +0.3 163,928 + -0.7 163,929 - -0.9 163,929 - +1.3 163,929 - -0.4 163,929 - -1.6 163,940 - +1.0 164,011 + -2.4 164,011 + +0.1 164,012 - -0.1 164,100 + GFF1562 0.11 +0.1 164,100 + GFF1562 0.11 -4.4 164,195 + GFF1562 0.21 +2.1 164,196 - GFF1562 0.22 -1.7 164,196 - GFF1562 0.22 +1.5 164,196 - GFF1562 0.22 -1.1 164,196 - GFF1562 0.22 -3.6 164,342 + GFF1562 0.37 -3.1 164,603 + GFF1562 0.66 -0.2 164,603 + GFF1562 0.66 -0.5 164,603 + GFF1562 0.66 +0.5 164,603 + GFF1562 0.66 +1.7 164,603 + GFF1562 0.66 -3.6 164,603 + GFF1562 0.66 +0.6 164,604 - GFF1562 0.66 -1.1 164,604 - GFF1562 0.66 -1.3 164,816 + GFF1562 0.89 -0.4 164,816 + GFF1562 0.89 -0.2 164,817 - GFF1562 0.89 +1.1 164,817 - GFF1562 0.89 +0.1 164,817 - GFF1562 0.89 -0.2 164,817 - GFF1562 0.89 -0.6
Or see this region's nucleotide sequence