Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1545 and GFF1546 are separated by 146 nucleotides GFF1546 and GFF1547 are separated by 10 nucleotides GFF1547 and GFF1548 are separated by 198 nucleotides
GFF1545 - Pyruvate dehydrogenase (quinone) (EC 1.2.5.1), at 143,047 to 144,765
GFF1545
GFF1546 - Tripartite tricarboxylate transporter TctA family, at 144,912 to 146,411
GFF1546
GFF1547 - protein of unknown function DUF1468, at 146,422 to 146,808
GFF1547
GFF1548 - Tripartite tricarboxylate transporter TctA family, at 147,007 to 148,533
GFF1548
Position (kb) 144
145
146
147 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 143.925 kb on - strand, within GFF1545 at 144.246 kb on - strand, within GFF1545 at 144.246 kb on - strand, within GFF1545 at 144.246 kb on - strand, within GFF1545 at 144.372 kb on - strand, within GFF1545 at 144.372 kb on - strand, within GFF1545 at 144.581 kb on + strand, within GFF1545 at 144.582 kb on - strand, within GFF1545 at 144.582 kb on - strand, within GFF1545 at 144.698 kb on + strand at 144.698 kb on + strand at 144.800 kb on + strand at 144.819 kb on - strand at 144.819 kb on - strand at 144.866 kb on - strand at 144.866 kb on - strand at 145.147 kb on + strand, within GFF1546 at 145.147 kb on + strand, within GFF1546 at 145.147 kb on + strand, within GFF1546 at 145.147 kb on + strand, within GFF1546 at 145.147 kb on + strand, within GFF1546 at 145.148 kb on - strand, within GFF1546 at 145.148 kb on - strand, within GFF1546 at 145.555 kb on + strand, within GFF1546 at 145.555 kb on + strand, within GFF1546 at 145.556 kb on - strand, within GFF1546 at 145.556 kb on - strand, within GFF1546 at 145.582 kb on + strand, within GFF1546 at 146.194 kb on + strand, within GFF1546 at 146.195 kb on - strand, within GFF1546 at 146.195 kb on - strand, within GFF1546 at 146.206 kb on + strand, within GFF1546 at 146.209 kb on + strand, within GFF1546 at 146.209 kb on + strand, within GFF1546 at 146.210 kb on - strand, within GFF1546 at 146.254 kb on + strand, within GFF1546 at 146.254 kb on + strand, within GFF1546 at 146.254 kb on + strand, within GFF1546 at 146.255 kb on - strand, within GFF1546 at 146.844 kb on + strand at 146.844 kb on + strand at 146.845 kb on - strand at 146.976 kb on - strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.989 kb on + strand at 146.989 kb on + strand at 146.990 kb on - strand at 146.990 kb on - strand at 146.990 kb on - strand at 147.212 kb on + strand, within GFF1548 at 147.212 kb on + strand, within GFF1548 at 147.212 kb on + strand, within GFF1548 at 147.212 kb on + strand, within GFF1548 at 147.212 kb on + strand, within GFF1548 at 147.213 kb on - strand, within GFF1548 at 147.213 kb on - strand, within GFF1548 at 147.288 kb on + strand, within GFF1548 at 147.288 kb on + strand, within GFF1548 at 147.290 kb on + strand, within GFF1548 at 147.290 kb on + strand, within GFF1548 at 147.290 kb on + strand, within GFF1548 at 147.290 kb on + strand, within GFF1548 at 147.290 kb on + strand, within GFF1548 at 147.291 kb on - strand, within GFF1548 at 147.291 kb on - strand, within GFF1548 at 147.291 kb on - strand, within GFF1548 at 147.291 kb on - strand, within GFF1548 at 147.291 kb on - strand, within GFF1548 at 147.293 kb on - strand, within GFF1548 at 147.320 kb on + strand, within GFF1548 at 147.320 kb on + strand, within GFF1548 at 147.321 kb on - strand, within GFF1548 at 147.356 kb on + strand, within GFF1548 at 147.357 kb on - strand, within GFF1548 at 147.357 kb on - strand, within GFF1548 at 147.357 kb on - strand, within GFF1548
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 143,925 - GFF1545 0.51 -2.3 144,246 - GFF1545 0.70 -2.3 144,246 - GFF1545 0.70 -3.3 144,246 - GFF1545 0.70 +0.1 144,372 - GFF1545 0.77 -1.4 144,372 - GFF1545 0.77 -3.5 144,581 + GFF1545 0.89 +2.8 144,582 - GFF1545 0.89 -2.5 144,582 - GFF1545 0.89 +0.4 144,698 + +0.6 144,698 + -1.3 144,800 + -0.1 144,819 - -0.2 144,819 - +1.9 144,866 - -0.6 144,866 - +0.1 145,147 + GFF1546 0.16 -0.1 145,147 + GFF1546 0.16 -0.6 145,147 + GFF1546 0.16 -2.1 145,147 + GFF1546 0.16 -1.3 145,147 + GFF1546 0.16 -0.9 145,148 - GFF1546 0.16 -2.1 145,148 - GFF1546 0.16 -0.4 145,555 + GFF1546 0.43 -1.3 145,555 + GFF1546 0.43 -0.7 145,556 - GFF1546 0.43 -1.5 145,556 - GFF1546 0.43 -3.4 145,582 + GFF1546 0.45 +0.2 146,194 + GFF1546 0.85 +1.2 146,195 - GFF1546 0.86 -0.7 146,195 - GFF1546 0.86 +0.9 146,206 + GFF1546 0.86 -1.9 146,209 + GFF1546 0.86 -2.0 146,209 + GFF1546 0.86 +0.0 146,210 - GFF1546 0.87 -1.4 146,254 + GFF1546 0.89 -2.5 146,254 + GFF1546 0.89 -1.8 146,254 + GFF1546 0.89 -2.1 146,255 - GFF1546 0.90 -0.9 146,844 + +1.9 146,844 + +0.1 146,845 - -0.9 146,976 - +0.4 146,985 + -0.9 146,985 + -0.1 146,985 + -0.2 146,985 + -0.1 146,985 + +0.4 146,985 + -4.5 146,985 + -3.6 146,986 - -1.6 146,986 - +1.1 146,986 - -0.6 146,986 - -2.5 146,986 - -2.4 146,986 - -2.1 146,986 - -0.0 146,986 - -1.6 146,989 + +0.4 146,989 + -0.7 146,990 - -0.1 146,990 - -1.3 146,990 - -1.3 147,212 + GFF1548 0.13 +0.8 147,212 + GFF1548 0.13 +0.1 147,212 + GFF1548 0.13 +0.6 147,212 + GFF1548 0.13 -0.2 147,212 + GFF1548 0.13 +0.9 147,213 - GFF1548 0.13 +0.6 147,213 - GFF1548 0.13 +0.8 147,288 + GFF1548 0.18 +0.5 147,288 + GFF1548 0.18 -1.1 147,290 + GFF1548 0.19 +2.9 147,290 + GFF1548 0.19 -0.5 147,290 + GFF1548 0.19 -0.7 147,290 + GFF1548 0.19 -0.5 147,290 + GFF1548 0.19 +0.3 147,291 - GFF1548 0.19 +0.3 147,291 - GFF1548 0.19 +0.7 147,291 - GFF1548 0.19 -2.2 147,291 - GFF1548 0.19 -1.9 147,291 - GFF1548 0.19 +0.3 147,293 - GFF1548 0.19 -1.7 147,320 + GFF1548 0.20 -0.3 147,320 + GFF1548 0.20 +1.4 147,321 - GFF1548 0.21 -1.0 147,356 + GFF1548 0.23 +0.9 147,357 - GFF1548 0.23 -0.7 147,357 - GFF1548 0.23 +0.2 147,357 - GFF1548 0.23 -1.9
Or see this region's nucleotide sequence