Strain Fitness in Variovorax sp. SCN45 around GFF1527

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
122,286	+		GFF1526	0.39	-2.3
122,286	+		GFF1526	0.39	-0.4
122,286	+		GFF1526	0.39	+0.0
122,287	-		GFF1526	0.39	-1.1
122,287	-		GFF1526	0.39	+1.5
122,287	-		GFF1526	0.39	-1.5
122,287	-		GFF1526	0.39	+0.8
122,287	-		GFF1526	0.39	-2.4
122,287	-		GFF1526	0.39	-1.0
122,287	-		GFF1526	0.39	-0.1
122,391	+		GFF1526	0.48	-0.1
122,391	+		GFF1526	0.48	-1.3
122,391	+		GFF1526	0.48	-0.2
122,392	-		GFF1526	0.48	-2.1
122,392	-		GFF1526	0.48	-0.9
122,392	-		GFF1526	0.48	-1.5
122,392	-		GFF1526	0.48	-1.5
122,392	-		GFF1526	0.48	+1.0
122,527	-		GFF1526	0.60	-2.4
122,527	-		GFF1526	0.60	+0.3
122,527	-		GFF1526	0.60	-0.7
122,527	-		GFF1526	0.60	-0.4
122,600	-		GFF1526	0.66	-2.0
122,796	+		GFF1526	0.83	-0.3
122,804	+		GFF1526	0.84	-1.8
122,804	+		GFF1526	0.84	+0.1
123,130	+				-0.7
123,545	-		GFF1527	0.17	-0.1
123,682	+		GFF1527	0.22	-0.1
123,682	+		GFF1527	0.22	+0.8
123,683	-		GFF1527	0.22	-0.9
123,683	-		GFF1527	0.22	+0.0
123,710	-		GFF1527	0.23	-3.6
123,710	-		GFF1527	0.23	-2.3
123,728	-		GFF1527	0.24	-3.2
123,764	+		GFF1527	0.25	-0.4
123,765	-		GFF1527	0.25	+1.9
123,765	-		GFF1527	0.25	-1.3
123,775	+		GFF1527	0.26	+0.5
123,775	+		GFF1527	0.26	+0.1
123,775	+		GFF1527	0.26	+0.3
123,775	+		GFF1527	0.26	+0.7
123,776	-		GFF1527	0.26	+0.2
123,830	-		GFF1527	0.28	-1.1
123,877	+		GFF1527	0.30	-0.1
123,877	+		GFF1527	0.30	+0.3
123,877	+		GFF1527	0.30	-2.5
124,033	+		GFF1527	0.36	+0.1
124,065	+		GFF1527	0.38	-1.3
124,066	-		GFF1527	0.38	+0.7
124,078	+		GFF1527	0.38	-1.2
124,078	+		GFF1527	0.38	-2.7
124,079	-		GFF1527	0.38	-1.2
124,099	+		GFF1527	0.39	-0.8
124,099	+		GFF1527	0.39	-2.2
124,099	+		GFF1527	0.39	+0.9
124,099	+		GFF1527	0.39	+1.7
124,100	-		GFF1527	0.39	-1.3
124,100	-		GFF1527	0.39	-2.2
124,100	-		GFF1527	0.39	+1.9
124,162	+		GFF1527	0.42	-0.4
124,162	+		GFF1527	0.42	+1.7
124,163	-		GFF1527	0.42	+1.0
124,163	-		GFF1527	0.42	-3.1
124,196	-		GFF1527	0.43	-2.0
124,294	+		GFF1527	0.47	-2.4
124,294	+		GFF1527	0.47	-1.3
124,295	-		GFF1527	0.47	-4.2
124,375	+		GFF1527	0.50	-1.4
124,376	-		GFF1527	0.50	-0.4
124,387	+		GFF1527	0.51	+0.3
124,387	+		GFF1527	0.51	-0.5
124,388	-		GFF1527	0.51	-3.4
124,388	-		GFF1527	0.51	+0.3
124,489	+		GFF1527	0.55	+1.5
124,489	+		GFF1527	0.55	+1.4
124,580	-		GFF1527	0.59	-2.3
124,580	-		GFF1527	0.59	+1.2
124,705	+		GFF1527	0.64	+0.3
124,705	+		GFF1527	0.64	+1.9
124,705	+		GFF1527	0.64	+0.3
124,706	-		GFF1527	0.64	+1.6
124,706	-		GFF1527	0.64	+0.0
124,706	-		GFF1527	0.64	-1.0
124,706	-		GFF1527	0.64	+0.9
124,855	+		GFF1527	0.70	+1.0
124,855	+		GFF1527	0.70	-2.3
124,856	-		GFF1527	0.70	+1.9
124,984	+		GFF1527	0.75	+2.1
125,026	+		GFF1527	0.77	-0.8
125,027	-		GFF1527	0.77	+0.9
125,027	-		GFF1527	0.77	-2.0
125,167	+		GFF1527	0.82	+1.6
125,167	+		GFF1527	0.82	-1.1
125,167	+		GFF1527	0.82	-0.1
125,167	+		GFF1527	0.82	-1.5
125,173	+		GFF1527	0.83	-0.2
125,173	+		GFF1527	0.83	-2.4
125,173	+		GFF1527	0.83	+0.9
125,173	+		GFF1527	0.83	-2.3
125,173	+		GFF1527	0.83	-0.4
125,173	+		GFF1527	0.83	-2.6
125,173	+		GFF1527	0.83	+1.0
125,173	+		GFF1527	0.83	-0.3
125,173	+		GFF1527	0.83	-1.4
125,173	+		GFF1527	0.83	-0.4
125,173	+		GFF1527	0.83	+0.5
125,173	+		GFF1527	0.83	-2.3
125,173	+		GFF1527	0.83	+0.1
125,173	+		GFF1527	0.83	-1.3
125,173	+		GFF1527	0.83	-3.6
125,173	+		GFF1527	0.83	-1.7
125,173	+		GFF1527	0.83	+0.9
125,174	-		GFF1527	0.83	+0.3
125,174	-		GFF1527	0.83	-1.7
125,174	-		GFF1527	0.83	-0.9
125,174	-		GFF1527	0.83	-0.5
125,174	-		GFF1527	0.83	+0.3
125,174	-		GFF1527	0.83	-2.2
125,174	-		GFF1527	0.83	-2.6
125,174	-		GFF1527	0.83	-1.7
125,281	+		GFF1527	0.87	-0.4
125,281	+		GFF1527	0.87	-2.8
125,281	+		GFF1527	0.87	+0.0
125,281	+		GFF1527	0.87	-0.4
125,282	-		GFF1527	0.87	+0.7
125,282	-		GFF1527	0.87	+1.5
125,339	-		GFF1527	0.89	-3.0
125,339	-		GFF1527	0.89	-1.0
125,339	-		GFF1527	0.89	-1.1
125,359	+				+0.4
125,420	-				-2.6
125,420	-				+0.9
125,420	-				-3.0
125,420	-				-0.9
125,428	+				-0.3
125,428	+				-0.1
125,428	+				-1.1
125,429	-				+0.2
125,446	+				+1.7
125,506	+				-0.4
125,506	+				-1.7
125,506	+				-1.4
125,507	-				-0.8
125,507	-				+1.7
125,549	-				-1.4
125,549	-				-0.3
125,549	-				+1.8
125,551	+				-0.9
125,551	+				+0.3
125,551	+				-0.7
125,551	+				+0.3
125,552	-				-0.4
125,587	+				-0.4
125,587	+				-1.7
125,587	+				-0.1
125,587	+				-0.2
125,951	-		GFF1528	0.28	+1.8
125,951	-		GFF1528	0.28	+1.9
125,951	-		GFF1528	0.28	-0.2
126,025	+		GFF1528	0.33	+0.7
126,026	-		GFF1528	0.34	+1.4
126,037	+		GFF1528	0.34	-2.1
126,037	+		GFF1528	0.34	-4.6
126,038	-		GFF1528	0.35	+1.0
126,050	+		GFF1528	0.35	+1.3
126,050	+		GFF1528	0.35	-1.9
126,050	+		GFF1528	0.35	-0.4
126,050	+		GFF1528	0.35	-2.4
126,050	+		GFF1528	0.35	-0.4
126,050	+		GFF1528	0.35	-0.3
126,051	-		GFF1528	0.36	+0.8
126,051	-		GFF1528	0.36	-1.1
126,051	-		GFF1528	0.36	+1.7
126,136	+		GFF1528	0.42	-0.1
126,136	+		GFF1528	0.42	-0.2
126,136	+		GFF1528	0.42	-1.0
126,136	+		GFF1528	0.42	-0.1
126,136	+		GFF1528	0.42	+0.3
126,136	+		GFF1528	0.42	+0.5
126,137	-		GFF1528	0.42	+0.4
126,137	-		GFF1528	0.42	-0.7
126,137	-		GFF1528	0.42	+0.5
126,137	-		GFF1528	0.42	-0.1
126,137	-		GFF1528	0.42	+0.3
126,137	-		GFF1528	0.42	-1.4
126,138	+		GFF1528	0.43	-1.1
126,138	+		GFF1528	0.43	-1.4
126,138	+		GFF1528	0.43	-0.4
126,138	+		GFF1528	0.43	-2.9
126,139	-		GFF1528	0.43	+1.2
126,258	-		GFF1528	0.52	-1.1
126,384	-		GFF1528	0.62	-2.3
126,493	+		GFF1528	0.71	+0.4
126,494	-		GFF1528	0.71	-3.6
126,506	-		GFF1528	0.72	-0.4
126,506	-		GFF1528	0.72	+0.9
126,506	-		GFF1528	0.72	-1.1
126,514	+		GFF1528	0.72	+0.1
126,515	-		GFF1528	0.73	+0.6
126,580	+		GFF1528	0.78	+1.1
126,580	+		GFF1528	0.78	+0.0
126,581	-		GFF1528	0.78	+1.4
126,581	-		GFF1528	0.78	-1.1