Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1477 and GFF1478 are separated by 45 nucleotides GFF1478 and GFF1479 are separated by 33 nucleotides GFF1479 and GFF1480 are separated by 27 nucleotides
GFF1477 - BUG/TctC family periplasmic protein, at 68,590 to 69,558
GFF1477
GFF1478 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31), at 69,604 to 70,482
GFF1478
GFF1479 - Aldehyde dehydrogenase (EC 1.2.1.3), at 70,516 to 72,012
GFF1479
GFF1480 - Choline-sulfatase (EC 3.1.6.6), at 72,040 to 73,563
GFF1480
Position (kb) 70
71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 69.677 kb on + strand at 69.678 kb on - strand at 69.836 kb on + strand, within GFF1478 at 70.238 kb on + strand, within GFF1478 at 70.616 kb on + strand at 70.773 kb on - strand, within GFF1479 at 70.959 kb on - strand, within GFF1479 at 70.959 kb on - strand, within GFF1479 at 71.628 kb on - strand, within GFF1479 at 71.628 kb on - strand, within GFF1479 at 71.733 kb on + strand, within GFF1479 at 71.733 kb on + strand, within GFF1479 at 71.734 kb on - strand, within GFF1479 at 71.734 kb on - strand, within GFF1479 at 71.737 kb on + strand, within GFF1479 at 72.017 kb on + strand at 72.017 kb on + strand at 72.017 kb on + strand at 72.017 kb on + strand at 72.017 kb on + strand at 72.017 kb on + strand at 72.018 kb on - strand at 72.018 kb on - strand at 72.018 kb on - strand at 72.018 kb on - strand at 72.018 kb on - strand at 72.018 kb on - strand at 72.018 kb on - strand at 72.018 kb on - strand at 72.080 kb on - strand at 72.113 kb on + strand at 72.113 kb on + strand at 72.114 kb on - strand at 72.332 kb on + strand, within GFF1480 at 72.333 kb on - strand, within GFF1480 at 72.333 kb on - strand, within GFF1480 at 72.347 kb on + strand, within GFF1480 at 72.365 kb on + strand, within GFF1480 at 72.366 kb on - strand, within GFF1480 at 72.422 kb on + strand, within GFF1480 at 72.423 kb on - strand, within GFF1480 at 72.780 kb on - strand, within GFF1480 at 72.795 kb on - strand, within GFF1480 at 72.795 kb on - strand, within GFF1480 at 72.797 kb on + strand, within GFF1480 at 72.798 kb on - strand, within GFF1480 at 72.992 kb on + strand, within GFF1480
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 69,677 + -0.3 69,678 - -2.8 69,836 + GFF1478 0.26 -2.7 70,238 + GFF1478 0.72 -1.4 70,616 + -0.4 70,773 - GFF1479 0.17 -1.6 70,959 - GFF1479 0.30 -2.4 70,959 - GFF1479 0.30 -0.5 71,628 - GFF1479 0.74 +1.2 71,628 - GFF1479 0.74 -0.1 71,733 + GFF1479 0.81 -1.1 71,733 + GFF1479 0.81 -0.2 71,734 - GFF1479 0.81 +2.9 71,734 - GFF1479 0.81 +0.1 71,737 + GFF1479 0.82 -0.1 72,017 + -1.5 72,017 + -0.9 72,017 + +0.2 72,017 + +0.9 72,017 + +1.2 72,017 + +0.7 72,018 - -1.0 72,018 - +0.1 72,018 - +1.0 72,018 - -2.5 72,018 - +0.9 72,018 - +1.4 72,018 - +0.0 72,018 - -0.5 72,080 - -2.9 72,113 + +0.6 72,113 + -0.7 72,114 - +0.5 72,332 + GFF1480 0.19 -1.2 72,333 - GFF1480 0.19 -1.4 72,333 - GFF1480 0.19 -0.7 72,347 + GFF1480 0.20 +1.0 72,365 + GFF1480 0.21 -0.1 72,366 - GFF1480 0.21 +0.7 72,422 + GFF1480 0.25 +1.5 72,423 - GFF1480 0.25 -1.1 72,780 - GFF1480 0.49 +0.1 72,795 - GFF1480 0.50 +0.1 72,795 - GFF1480 0.50 +0.1 72,797 + GFF1480 0.50 +0.7 72,798 - GFF1480 0.50 -0.5 72,992 + GFF1480 0.62 +0.6
Or see this region's nucleotide sequence