Strain Fitness in Variovorax sp. SCN45 around GFF1339

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1338 and GFF1339 are separated by 4 nucleotidesGFF1339 and GFF1340 overlap by 4 nucleotidesGFF1340 and GFF1341 are separated by 1 nucleotides GFF1338 - ABC transporter, permease protein 1 RSc1751, at 679,949 to 680,902 GFF1338 GFF1339 - ABC transporter, permease protein 2 RSc1752, at 680,907 to 682,235 GFF1339 GFF1340 - ABC transporter, ATP-binding protein 1 RSc1753, at 682,232 to 683,002 GFF1340 GFF1341 - ABC transporter, ATP-binding protein 2 RSc1754, at 683,004 to 683,699 GFF1341 Position (kb) 680 681 682 683Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 679.994 kb on + strandat 679.994 kb on + strandat 679.994 kb on + strandat 679.994 kb on + strandat 679.994 kb on + strandat 679.995 kb on - strandat 679.995 kb on - strandat 679.995 kb on - strandat 679.995 kb on - strandat 679.995 kb on - strandat 680.081 kb on + strand, within GFF1338at 680.082 kb on - strand, within GFF1338at 680.097 kb on - strand, within GFF1338at 680.193 kb on - strand, within GFF1338at 680.258 kb on + strand, within GFF1338at 680.351 kb on + strand, within GFF1338at 680.585 kb on + strand, within GFF1338at 680.585 kb on + strand, within GFF1338at 680.585 kb on + strand, within GFF1338at 680.585 kb on + strand, within GFF1338at 680.586 kb on - strand, within GFF1338at 680.586 kb on - strand, within GFF1338at 680.586 kb on - strand, within GFF1338at 680.790 kb on - strand, within GFF1338at 680.837 kb on + strandat 680.837 kb on + strandat 680.838 kb on - strandat 680.913 kb on - strandat 680.913 kb on - strandat 680.952 kb on + strandat 680.952 kb on + strandat 680.952 kb on + strandat 680.953 kb on - strandat 680.953 kb on - strandat 680.953 kb on - strandat 680.955 kb on + strandat 681.078 kb on + strand, within GFF1339at 681.102 kb on + strand, within GFF1339at 681.103 kb on - strand, within GFF1339at 681.103 kb on - strand, within GFF1339at 681.153 kb on + strand, within GFF1339at 681.154 kb on - strand, within GFF1339at 681.465 kb on + strand, within GFF1339at 681.465 kb on + strand, within GFF1339at 681.465 kb on + strand, within GFF1339at 681.465 kb on + strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.468 kb on + strand, within GFF1339at 681.468 kb on + strand, within GFF1339at 681.468 kb on + strand, within GFF1339at 681.469 kb on - strand, within GFF1339at 681.469 kb on - strand, within GFF1339at 681.469 kb on - strand, within GFF1339at 681.483 kb on + strand, within GFF1339at 681.723 kb on + strand, within GFF1339at 681.724 kb on - strand, within GFF1339at 681.724 kb on - strand, within GFF1339at 681.724 kb on - strand, within GFF1339at 681.840 kb on + strand, within GFF1339at 681.840 kb on + strand, within GFF1339at 681.841 kb on - strand, within GFF1339at 681.948 kb on + strand, within GFF1339at 681.948 kb on + strand, within GFF1339at 681.948 kb on + strand, within GFF1339at 681.948 kb on + strand, within GFF1339at 681.949 kb on - strand, within GFF1339at 681.949 kb on - strand, within GFF1339at 681.957 kb on + strand, within GFF1339at 681.957 kb on + strand, within GFF1339at 681.958 kb on - strand, within GFF1339at 681.958 kb on - strand, within GFF1339at 681.958 kb on - strand, within GFF1339at 681.958 kb on - strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.023 kb on + strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.024 kb on - strand, within GFF1339at 682.238 kb on + strandat 682.238 kb on + strandat 682.238 kb on + strandat 682.239 kb on - strandat 682.239 kb on - strandat 682.239 kb on - strandat 682.451 kb on + strand, within GFF1340at 682.559 kb on + strand, within GFF1340at 682.560 kb on - strand, within GFF1340at 682.560 kb on - strand, within GFF1340at 682.565 kb on + strand, within GFF1340at 682.565 kb on + strand, within GFF1340at 682.565 kb on + strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.566 kb on - strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.679 kb on + strand, within GFF1340at 682.680 kb on - strand, within GFF1340at 682.892 kb on + strand, within GFF1340at 682.958 kb on + strandat 682.958 kb on + strandat 682.959 kb on - strandat 682.959 kb on - strandat 683.031 kb on + strandat 683.032 kb on - strandat 683.035 kb on - strandat 683.211 kb on + strand, within GFF1341at 683.212 kb on - strand, within GFF1341at 683.212 kb on - strand, within GFF1341

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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679,994 + -0.8
679,994 + +0.4
679,994 + -0.4
679,994 + -0.0
679,994 + +1.6
679,995 - -0.2
679,995 - -1.9
679,995 - -2.4
679,995 - -2.9
679,995 - +0.5
680,081 + GFF1338 0.14 -0.0
680,082 - GFF1338 0.14 -1.2
680,097 - GFF1338 0.16 -0.6
680,193 - GFF1338 0.26 -1.2
680,258 + GFF1338 0.32 +0.7
680,351 + GFF1338 0.42 +2.2
680,585 + GFF1338 0.67 -0.7
680,585 + GFF1338 0.67 -1.0
680,585 + GFF1338 0.67 -0.5
680,585 + GFF1338 0.67 +1.6
680,586 - GFF1338 0.67 -2.0
680,586 - GFF1338 0.67 -0.6
680,586 - GFF1338 0.67 -1.8
680,790 - GFF1338 0.88 +0.1
680,837 + -0.9
680,837 + -0.2
680,838 - -2.2
680,913 - +1.2
680,913 - +1.4
680,952 + +0.7
680,952 + +3.1
680,952 + -0.5
680,953 - -3.2
680,953 - -3.7
680,953 - +0.0
680,955 + +1.0
681,078 + GFF1339 0.13 +0.1
681,102 + GFF1339 0.15 -1.6
681,103 - GFF1339 0.15 -1.4
681,103 - GFF1339 0.15 +3.6
681,153 + GFF1339 0.19 -2.5
681,154 - GFF1339 0.19 -3.4
681,465 + GFF1339 0.42 +0.2
681,465 + GFF1339 0.42 -1.6
681,465 + GFF1339 0.42 -0.3
681,465 + GFF1339 0.42 -0.6
681,466 - GFF1339 0.42 +1.0
681,466 - GFF1339 0.42 -3.5
681,466 - GFF1339 0.42 +0.7
681,466 - GFF1339 0.42 +1.2
681,466 - GFF1339 0.42 +2.8
681,466 - GFF1339 0.42 +0.9
681,466 - GFF1339 0.42 -2.2
681,466 - GFF1339 0.42 -1.1
681,468 + GFF1339 0.42 -0.8
681,468 + GFF1339 0.42 -2.0
681,468 + GFF1339 0.42 +0.1
681,469 - GFF1339 0.42 -1.4
681,469 - GFF1339 0.42 -2.1
681,469 - GFF1339 0.42 -2.0
681,483 + GFF1339 0.43 -1.7
681,723 + GFF1339 0.61 +0.6
681,724 - GFF1339 0.61 +1.8
681,724 - GFF1339 0.61 -1.4
681,724 - GFF1339 0.61 -1.9
681,840 + GFF1339 0.70 +2.5
681,840 + GFF1339 0.70 -2.1
681,841 - GFF1339 0.70 -1.6
681,948 + GFF1339 0.78 -0.0
681,948 + GFF1339 0.78 -1.8
681,948 + GFF1339 0.78 -2.3
681,948 + GFF1339 0.78 +0.6
681,949 - GFF1339 0.78 -3.3
681,949 - GFF1339 0.78 -0.1
681,957 + GFF1339 0.79 -2.8
681,957 + GFF1339 0.79 -1.4
681,958 - GFF1339 0.79 -1.0
681,958 - GFF1339 0.79 -2.1
681,958 - GFF1339 0.79 -1.9
681,958 - GFF1339 0.79 -2.6
682,023 + GFF1339 0.84 -0.1
682,023 + GFF1339 0.84 +1.6
682,023 + GFF1339 0.84 +0.0
682,023 + GFF1339 0.84 -1.4
682,023 + GFF1339 0.84 -0.0
682,024 - GFF1339 0.84 -4.4
682,024 - GFF1339 0.84 +0.1
682,024 - GFF1339 0.84 -3.3
682,024 - GFF1339 0.84 +1.1
682,024 - GFF1339 0.84 +1.3
682,024 - GFF1339 0.84 -0.0
682,024 - GFF1339 0.84 -2.6
682,024 - GFF1339 0.84 +1.9
682,024 - GFF1339 0.84 -1.1
682,024 - GFF1339 0.84 -2.4
682,024 - GFF1339 0.84 -1.0
682,238 + -3.4
682,238 + +0.3
682,238 + -0.9
682,239 - -1.4
682,239 - -0.9
682,239 - -2.8
682,451 + GFF1340 0.28 -0.1
682,559 + GFF1340 0.42 -0.0
682,560 - GFF1340 0.43 +1.3
682,560 - GFF1340 0.43 +1.5
682,565 + GFF1340 0.43 -0.5
682,565 + GFF1340 0.43 -1.5
682,565 + GFF1340 0.43 -0.8
682,566 - GFF1340 0.43 +1.8
682,566 - GFF1340 0.43 -1.9
682,566 - GFF1340 0.43 +0.7
682,566 - GFF1340 0.43 -1.0
682,566 - GFF1340 0.43 -1.0
682,679 + GFF1340 0.58 -1.0
682,679 + GFF1340 0.58 +1.2
682,679 + GFF1340 0.58 +0.7
682,679 + GFF1340 0.58 -0.2
682,679 + GFF1340 0.58 +2.0
682,679 + GFF1340 0.58 -3.8
682,680 - GFF1340 0.58 -3.0
682,892 + GFF1340 0.86 -0.2
682,958 + -1.2
682,958 + -1.9
682,959 - -0.6
682,959 - -0.7
683,031 + -4.6
683,032 - -1.3
683,035 - -1.0
683,211 + GFF1341 0.30 +0.6
683,212 - GFF1341 0.30 -2.3
683,212 - GFF1341 0.30 -0.8

Or see this region's nucleotide sequence