Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF132 and GFF133 are separated by 35 nucleotides GFF133 and GFF134 overlap by 4 nucleotides
GFF132 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 160,488 to 161,459
GFF132
GFF133 - Ferredoxin, at 161,495 to 161,824
GFF133
GFF134 - putative oxidoreductase (AsfA-like), putative L-aspartate oxidase( EC:1.4.3.16 ), at 161,821 to 163,443
GFF134
Position (kb) 161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 160.681 kb on + strand, within GFF132 at 160.682 kb on - strand, within GFF132 at 160.684 kb on + strand, within GFF132 at 160.684 kb on + strand, within GFF132 at 160.996 kb on + strand, within GFF132 at 160.996 kb on + strand, within GFF132 at 160.997 kb on - strand, within GFF132 at 161.008 kb on + strand, within GFF132 at 161.008 kb on + strand, within GFF132 at 161.008 kb on + strand, within GFF132 at 161.009 kb on - strand, within GFF132 at 161.009 kb on - strand, within GFF132 at 161.170 kb on + strand, within GFF132 at 161.170 kb on + strand, within GFF132 at 161.580 kb on + strand, within GFF133 at 161.581 kb on - strand, within GFF133 at 161.655 kb on + strand, within GFF133 at 161.676 kb on + strand, within GFF133 at 161.676 kb on + strand, within GFF133 at 161.972 kb on + strand at 161.973 kb on - strand at 162.389 kb on + strand, within GFF134 at 162.680 kb on + strand, within GFF134 at 162.681 kb on - strand, within GFF134
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 160,681 + GFF132 0.20 -0.2 160,682 - GFF132 0.20 +1.0 160,684 + GFF132 0.20 +0.4 160,684 + GFF132 0.20 +0.2 160,996 + GFF132 0.52 +1.2 160,996 + GFF132 0.52 -0.0 160,997 - GFF132 0.52 -1.8 161,008 + GFF132 0.53 -2.5 161,008 + GFF132 0.53 -2.4 161,008 + GFF132 0.53 +1.7 161,009 - GFF132 0.54 -0.8 161,009 - GFF132 0.54 -0.9 161,170 + GFF132 0.70 -1.5 161,170 + GFF132 0.70 -1.3 161,580 + GFF133 0.26 +1.2 161,581 - GFF133 0.26 -3.2 161,655 + GFF133 0.48 -0.5 161,676 + GFF133 0.55 +1.5 161,676 + GFF133 0.55 -2.5 161,972 + -1.2 161,973 - +1.3 162,389 + GFF134 0.35 -0.5 162,680 + GFF134 0.53 -1.0 162,681 - GFF134 0.53 -2.9
Or see this region's nucleotide sequence