Strain Fitness in Variovorax sp. SCN45 around GFF1305

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1304 and GFF1305 overlap by 4 nucleotidesGFF1305 and GFF1306 are separated by 38 nucleotidesGFF1306 and GFF1307 are separated by 106 nucleotides GFF1304 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 634,782 to 635,789 GFF1304 GFF1305 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 635,786 to 636,841 GFF1305 GFF1306 - no description, at 636,880 to 637,005 GFF1306 GFF1307 - Homoserine dehydrogenase (EC 1.1.1.3), at 637,112 to 638,476 GFF1307 Position (kb) 635 636 637Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 635.145 kb on + strand, within GFF1304at 635.145 kb on + strand, within GFF1304at 635.145 kb on + strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.321 kb on + strand, within GFF1304at 635.321 kb on + strand, within GFF1304at 635.322 kb on - strand, within GFF1304at 635.322 kb on - strand, within GFF1304at 635.349 kb on - strand, within GFF1304at 635.349 kb on - strand, within GFF1304at 635.388 kb on + strand, within GFF1304at 635.388 kb on + strand, within GFF1304at 635.388 kb on + strand, within GFF1304at 635.388 kb on + strand, within GFF1304at 635.389 kb on - strand, within GFF1304at 635.389 kb on - strand, within GFF1304at 635.389 kb on - strand, within GFF1304at 635.389 kb on - strand, within GFF1304at 635.389 kb on - strand, within GFF1304at 635.416 kb on + strand, within GFF1304at 635.419 kb on - strand, within GFF1304at 635.419 kb on - strand, within GFF1304at 635.712 kb on + strandat 635.712 kb on + strandat 635.712 kb on + strandat 635.712 kb on + strandat 635.712 kb on + strandat 635.713 kb on - strandat 635.713 kb on - strandat 635.713 kb on - strandat 635.754 kb on + strandat 635.754 kb on + strandat 635.754 kb on + strandat 636.335 kb on + strand, within GFF1305at 636.335 kb on + strand, within GFF1305at 636.336 kb on - strand, within GFF1305at 636.336 kb on - strand, within GFF1305at 636.336 kb on - strand, within GFF1305at 636.476 kb on + strand, within GFF1305at 636.476 kb on + strand, within GFF1305at 636.476 kb on + strand, within GFF1305at 636.477 kb on - strand, within GFF1305at 636.737 kb on + strandat 636.737 kb on + strandat 636.737 kb on + strandat 636.738 kb on - strandat 636.738 kb on - strandat 636.749 kb on + strandat 636.750 kb on - strandat 636.770 kb on + strandat 636.770 kb on + strandat 636.800 kb on + strandat 636.801 kb on - strandat 636.864 kb on + strandat 636.987 kb on + strand, within GFF1306at 636.987 kb on + strand, within GFF1306at 636.987 kb on + strand, within GFF1306at 636.988 kb on - strand, within GFF1306at 636.988 kb on - strand, within GFF1306at 637.041 kb on + strandat 637.041 kb on + strandat 637.041 kb on + strandat 637.041 kb on + strandat 637.041 kb on + strandat 637.041 kb on + strandat 637.041 kb on + strandat 637.042 kb on - strandat 637.042 kb on - strandat 637.042 kb on - strandat 637.042 kb on - strandat 637.042 kb on - strandat 637.042 kb on - strandat 637.115 kb on + strandat 637.115 kb on + strandat 637.115 kb on + strandat 637.115 kb on + strandat 637.115 kb on + strandat 637.115 kb on + strandat 637.115 kb on + strandat 637.116 kb on - strandat 637.116 kb on - strandat 637.116 kb on - strandat 637.116 kb on - strandat 637.116 kb on - strandat 637.174 kb on + strandat 637.174 kb on + strandat 637.175 kb on - strandat 637.325 kb on - strand, within GFF1307at 637.325 kb on - strand, within GFF1307at 637.551 kb on - strand, within GFF1307at 637.551 kb on - strand, within GFF1307at 637.551 kb on - strand, within GFF1307

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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635,145 + GFF1304 0.36 +0.9
635,145 + GFF1304 0.36 -1.8
635,145 + GFF1304 0.36 -3.2
635,146 - GFF1304 0.36 +2.2
635,146 - GFF1304 0.36 -0.8
635,146 - GFF1304 0.36 -0.0
635,146 - GFF1304 0.36 +2.4
635,146 - GFF1304 0.36 -0.2
635,146 - GFF1304 0.36 +0.4
635,321 + GFF1304 0.53 +1.2
635,321 + GFF1304 0.53 +0.8
635,322 - GFF1304 0.54 -2.2
635,322 - GFF1304 0.54 -2.6
635,349 - GFF1304 0.56 -0.8
635,349 - GFF1304 0.56 -1.2
635,388 + GFF1304 0.60 +2.2
635,388 + GFF1304 0.60 +0.0
635,388 + GFF1304 0.60 +1.9
635,388 + GFF1304 0.60 +2.6
635,389 - GFF1304 0.60 -0.8
635,389 - GFF1304 0.60 -0.8
635,389 - GFF1304 0.60 +0.4
635,389 - GFF1304 0.60 -2.7
635,389 - GFF1304 0.60 -0.2
635,416 + GFF1304 0.63 +1.0
635,419 - GFF1304 0.63 -0.0
635,419 - GFF1304 0.63 +0.9
635,712 + -3.1
635,712 + -0.1
635,712 + -1.0
635,712 + +1.8
635,712 + -0.8
635,713 - -1.8
635,713 - -0.4
635,713 - -1.0
635,754 + +0.9
635,754 + -0.8
635,754 + -2.3
636,335 + GFF1305 0.52 -1.0
636,335 + GFF1305 0.52 +0.8
636,336 - GFF1305 0.52 +1.1
636,336 - GFF1305 0.52 -1.6
636,336 - GFF1305 0.52 -1.2
636,476 + GFF1305 0.65 +2.2
636,476 + GFF1305 0.65 -2.0
636,476 + GFF1305 0.65 -0.4
636,477 - GFF1305 0.65 -0.4
636,737 + +1.0
636,737 + -3.0
636,737 + -0.9
636,738 - -1.2
636,738 - -2.0
636,749 + -0.9
636,750 - -1.0
636,770 + -1.5
636,770 + -1.8
636,800 + -1.6
636,801 - -2.3
636,864 + +0.0
636,987 + GFF1306 0.85 +0.3
636,987 + GFF1306 0.85 +1.2
636,987 + GFF1306 0.85 -0.8
636,988 - GFF1306 0.86 -1.9
636,988 - GFF1306 0.86 -0.9
637,041 + +1.3
637,041 + -3.0
637,041 + -0.2
637,041 + -1.6
637,041 + +1.4
637,041 + -1.9
637,041 + -3.5
637,042 - -3.7
637,042 - -2.8
637,042 - -2.2
637,042 - +1.1
637,042 - -0.8
637,042 - +1.3
637,115 + +1.1
637,115 + -2.2
637,115 + -2.6
637,115 + -3.3
637,115 + -2.0
637,115 + -1.2
637,115 + +0.7
637,116 - -0.0
637,116 - +0.2
637,116 - +1.6
637,116 - -3.1
637,116 - -3.0
637,174 + -0.8
637,174 + -0.4
637,175 - +2.2
637,325 - GFF1307 0.16 -2.4
637,325 - GFF1307 0.16 -1.4
637,551 - GFF1307 0.32 -0.8
637,551 - GFF1307 0.32 -1.4
637,551 - GFF1307 0.32 +0.2

Or see this region's nucleotide sequence